miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5180 5' -58.2 NC_001798.1 + 14968 0.66 0.799046
Target:  5'- -aGGCAUGUCCuuAGCgggaGCuuGGGCGGggGg -3'
miRNA:   3'- agUCGUACGGG--UCGa---CG--UCCGCCaaC- -5'
5180 5' -58.2 NC_001798.1 + 154127 0.66 0.799046
Target:  5'- gCGGCGgggacCCCGGCggcgggacaugGCGGGCGGcUGg -3'
miRNA:   3'- aGUCGUac---GGGUCGa----------CGUCCGCCaAC- -5'
5180 5' -58.2 NC_001798.1 + 47011 0.66 0.796339
Target:  5'- -gGGCGUGCCCGgggagccgccgaacGCgGCAGGCGc--- -3'
miRNA:   3'- agUCGUACGGGU--------------CGaCGUCCGCcaac -5'
5180 5' -58.2 NC_001798.1 + 44897 0.66 0.780751
Target:  5'- -uGGCGucccUGCUCGGgUGCuGuGCGGUUGg -3'
miRNA:   3'- agUCGU----ACGGGUCgACGuC-CGCCAAC- -5'
5180 5' -58.2 NC_001798.1 + 117078 0.66 0.771398
Target:  5'- gCAGCAcGCCC-GCgagaGCGcGGCGGggGa -3'
miRNA:   3'- aGUCGUaCGGGuCGa---CGU-CCGCCaaC- -5'
5180 5' -58.2 NC_001798.1 + 2422 0.67 0.752325
Target:  5'- cCGGCGUGuggcugggcCCCGGCgGCuGGCGGc-- -3'
miRNA:   3'- aGUCGUAC---------GGGUCGaCGuCCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 76857 0.67 0.742624
Target:  5'- -aGGCGUGUCCGGCcgUGCuGGCGa--- -3'
miRNA:   3'- agUCGUACGGGUCG--ACGuCCGCcaac -5'
5180 5' -58.2 NC_001798.1 + 44986 0.67 0.742624
Target:  5'- -aGGCGgaGCCgCGGCUGCAggaggcccuGGCGGUg- -3'
miRNA:   3'- agUCGUa-CGG-GUCGACGU---------CCGCCAac -5'
5180 5' -58.2 NC_001798.1 + 3461 0.67 0.742624
Target:  5'- gUCAGCAggaaGCCCuuCUGCGcGCGGUc- -3'
miRNA:   3'- -AGUCGUa---CGGGucGACGUcCGCCAac -5'
5180 5' -58.2 NC_001798.1 + 78156 0.67 0.732826
Target:  5'- -gAGCGUGCCCGGCcUGC-GcCGGUa- -3'
miRNA:   3'- agUCGUACGGGUCG-ACGuCcGCCAac -5'
5180 5' -58.2 NC_001798.1 + 94195 0.67 0.732826
Target:  5'- -gGGcCGUGCCCccuGCUGCAgcuccucgcgcGGCGGUc- -3'
miRNA:   3'- agUC-GUACGGGu--CGACGU-----------CCGCCAac -5'
5180 5' -58.2 NC_001798.1 + 148390 0.67 0.722941
Target:  5'- -gGGCGUGgCgGGCaggugUGCGGGCGGggUGg -3'
miRNA:   3'- agUCGUACgGgUCG-----ACGUCCGCCa-AC- -5'
5180 5' -58.2 NC_001798.1 + 148283 0.67 0.722941
Target:  5'- -gGGCGUGgCgGGCaggugUGCGGGCGGggUGg -3'
miRNA:   3'- agUCGUACgGgUCG-----ACGUCCGCCa-AC- -5'
5180 5' -58.2 NC_001798.1 + 135240 0.67 0.712976
Target:  5'- cCGGaa-GCCCGGggGCGGGCGGg-- -3'
miRNA:   3'- aGUCguaCGGGUCgaCGUCCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 65798 0.68 0.692849
Target:  5'- aCAGCccgAUGCCCccGUUGCGGGCGa--- -3'
miRNA:   3'- aGUCG---UACGGGu-CGACGUCCGCcaac -5'
5180 5' -58.2 NC_001798.1 + 43270 0.68 0.682704
Target:  5'- -gGGCGucgUGCCCuGCUGCuccguGGCGGc-- -3'
miRNA:   3'- agUCGU---ACGGGuCGACGu----CCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 35256 0.68 0.641792
Target:  5'- gCAGCAgaaaUGCCCacAGCaacacGCGGGCGGg-- -3'
miRNA:   3'- aGUCGU----ACGGG--UCGa----CGUCCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 30937 0.68 0.641792
Target:  5'- gCGGCGgggGUCgGGCgggggGCGGGCGGggGu -3'
miRNA:   3'- aGUCGUa--CGGgUCGa----CGUCCGCCaaC- -5'
5180 5' -58.2 NC_001798.1 + 96552 0.68 0.640766
Target:  5'- cCAGCAgaUCCGGCUGCAgacguacGGCGGg-- -3'
miRNA:   3'- aGUCGUacGGGUCGACGU-------CCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 67697 0.69 0.621257
Target:  5'- aCAGCGgcggGCCCgugggaGGCgggGUGGGCGGUa- -3'
miRNA:   3'- aGUCGUa---CGGG------UCGa--CGUCCGCCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.