miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5180 5' -58.2 NC_001798.1 + 104357 1.08 0.001624
Target:  5'- aUCAGCAUGCCCAGCUGCAGGCGGUUGu -3'
miRNA:   3'- -AGUCGUACGGGUCGACGUCCGCCAAC- -5'
5180 5' -58.2 NC_001798.1 + 41679 0.79 0.172321
Target:  5'- -uGGCGUGCCCgcaucgacgguaaacAGCgugUGCAGGCGGUUGu -3'
miRNA:   3'- agUCGUACGGG---------------UCG---ACGUCCGCCAAC- -5'
5180 5' -58.2 NC_001798.1 + 31237 0.75 0.285464
Target:  5'- gCAGCGgcggcGCCCcGUUGCGGGCGGgggUGg -3'
miRNA:   3'- aGUCGUa----CGGGuCGACGUCCGCCa--AC- -5'
5180 5' -58.2 NC_001798.1 + 36056 0.74 0.320546
Target:  5'- gUCGGCGUGCUgccggaGGCUGCGGGCGcGggGu -3'
miRNA:   3'- -AGUCGUACGGg-----UCGACGUCCGC-CaaC- -5'
5180 5' -58.2 NC_001798.1 + 61191 0.73 0.374913
Target:  5'- gUCGGCcUGCaCCGGCgcgcGCcGGCGGUUGc -3'
miRNA:   3'- -AGUCGuACG-GGUCGa---CGuCCGCCAAC- -5'
5180 5' -58.2 NC_001798.1 + 35582 0.72 0.417393
Target:  5'- gCGGCGcUGCUCGGCUGCGGccGCGGg-- -3'
miRNA:   3'- aGUCGU-ACGGGUCGACGUC--CGCCaac -5'
5180 5' -58.2 NC_001798.1 + 5433 0.72 0.426235
Target:  5'- gCGGCAUcucauuagcGCCCGGC-GCGGGCGGc-- -3'
miRNA:   3'- aGUCGUA---------CGGGUCGaCGUCCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 20323 0.71 0.500695
Target:  5'- gUAGCAgucucGCaCCAGgUggcGCAGGCGGUUGg -3'
miRNA:   3'- aGUCGUa----CG-GGUCgA---CGUCCGCCAAC- -5'
5180 5' -58.2 NC_001798.1 + 51479 0.71 0.500695
Target:  5'- --cGCGUgucggGCCCggAGCUGCAGGCGGc-- -3'
miRNA:   3'- aguCGUA-----CGGG--UCGACGUCCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 36833 0.7 0.520215
Target:  5'- gUCGGCGUGgggaCCGGCUGUgugguGGGUGGggGa -3'
miRNA:   3'- -AGUCGUACg---GGUCGACG-----UCCGCCaaC- -5'
5180 5' -58.2 NC_001798.1 + 48178 0.7 0.540025
Target:  5'- cCAcGCAcGCCCGGCUgGC-GGCGGUa- -3'
miRNA:   3'- aGU-CGUaCGGGUCGA-CGuCCGCCAac -5'
5180 5' -58.2 NC_001798.1 + 70318 0.7 0.560085
Target:  5'- gCGGUcgGCCCGGCggaggcGCGGGCGuGcUGg -3'
miRNA:   3'- aGUCGuaCGGGUCGa-----CGUCCGC-CaAC- -5'
5180 5' -58.2 NC_001798.1 + 110369 0.7 0.570193
Target:  5'- aCAGCAgcugGCCCAGggGCcgguGGCGGg-- -3'
miRNA:   3'- aGUCGUa---CGGGUCgaCGu---CCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 104505 0.69 0.579328
Target:  5'- --cGCGUGCCaaaaacgCGGCgGCGGcGCGGUUGa -3'
miRNA:   3'- aguCGUACGG-------GUCGaCGUC-CGCCAAC- -5'
5180 5' -58.2 NC_001798.1 + 121240 0.69 0.580345
Target:  5'- cCAGCgaGUGCCUGGCgGC-GGCGGggGu -3'
miRNA:   3'- aGUCG--UACGGGUCGaCGuCCGCCaaC- -5'
5180 5' -58.2 NC_001798.1 + 79184 0.69 0.590534
Target:  5'- cCuGUgcGCCCGGCUGCGGGaugaGGUg- -3'
miRNA:   3'- aGuCGuaCGGGUCGACGUCCg---CCAac -5'
5180 5' -58.2 NC_001798.1 + 121461 0.69 0.600754
Target:  5'- --cGCGUcCCCAGC-GCGGGCGGg-- -3'
miRNA:   3'- aguCGUAcGGGUCGaCGUCCGCCaac -5'
5180 5' -58.2 NC_001798.1 + 1148 0.69 0.610997
Target:  5'- gCGGCGUGgCCAGCcccGC-GGCGGUc- -3'
miRNA:   3'- aGUCGUACgGGUCGa--CGuCCGCCAac -5'
5180 5' -58.2 NC_001798.1 + 96021 0.69 0.610997
Target:  5'- aCGGCAca-CCGGCgggGCGGGCGGgcGg -3'
miRNA:   3'- aGUCGUacgGGUCGa--CGUCCGCCaaC- -5'
5180 5' -58.2 NC_001798.1 + 69524 0.69 0.62023
Target:  5'- -gGGCGUgGCCCgcgagcucgcgcgGGCUGguGGUGGUUu -3'
miRNA:   3'- agUCGUA-CGGG-------------UCGACguCCGCCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.