miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 3' -55 NC_001798.1 + 36038 0.65 0.929075
Target:  5'- uGGGGggUgGCGGCGGuggucggcgUGCUgCCGGAg -3'
miRNA:   3'- uUCCCuuA-UGUCGCU---------ACGGgGGCUUg -5'
5181 3' -55 NC_001798.1 + 76986 0.65 0.929075
Target:  5'- uGGGGcAGUACcGgGAgGCCCUgGAACa -3'
miRNA:   3'- uUCCC-UUAUGuCgCUaCGGGGgCUUG- -5'
5181 3' -55 NC_001798.1 + 150956 0.66 0.899299
Target:  5'- aGAGGGAG-ACAGagacgGGaGCCCCCGGu- -3'
miRNA:   3'- -UUCCCUUaUGUCg----CUaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 47227 0.66 0.899299
Target:  5'- gAAGGGGugggcgugucGUugGGCG--GCCCCCGGc- -3'
miRNA:   3'- -UUCCCU----------UAugUCGCuaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 110382 0.67 0.88568
Target:  5'- cAGGGGc--CGGUGGcggGCaCCCCGAACg -3'
miRNA:   3'- uUCCCUuauGUCGCUa--CG-GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 152098 0.68 0.838549
Target:  5'- cGGGGGucgGCcccgucaAGCGuccccGCCCCCGAGCc -3'
miRNA:   3'- uUCCCUua-UG-------UCGCua---CGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 11178 0.68 0.839386
Target:  5'- uGGGGGcgGUGgGGCGG-GCCUgCCGAACg -3'
miRNA:   3'- uUCCCU--UAUgUCGCUaCGGG-GGCUUG- -5'
5181 3' -55 NC_001798.1 + 122113 0.68 0.839386
Target:  5'- cGGGGGGcgcuuUGCcAGcCGGggggGCCCCCGGGCc -3'
miRNA:   3'- -UUCCCUu----AUG-UC-GCUa---CGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 146430 0.68 0.839386
Target:  5'- -cGGGcagAguGCGGaGCCCCCGGAg -3'
miRNA:   3'- uuCCCuuaUguCGCUaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 2964 0.68 0.84518
Target:  5'- -cGGGGcgcgucggcGUGCGGCGggGCggccggcccgcgggCCCCGGGCg -3'
miRNA:   3'- uuCCCU---------UAUGUCGCuaCG--------------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 30028 0.68 0.855678
Target:  5'- cGAGGGAG-GCAGgGAggaGCCCgaGAGCg -3'
miRNA:   3'- -UUCCCUUaUGUCgCUa--CGGGggCUUG- -5'
5181 3' -55 NC_001798.1 + 122703 0.67 0.862737
Target:  5'- uAGGGGAGgugacGCGGCGcuuccccGUGCUCCUGGAg -3'
miRNA:   3'- -UUCCCUUa----UGUCGC-------UACGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 2537 0.67 0.871126
Target:  5'- cGGGGcggGgGGCGcgGCCCCCGc-- -3'
miRNA:   3'- uUCCCuuaUgUCGCuaCGGGGGCuug -5'
5181 3' -55 NC_001798.1 + 113762 0.67 0.878518
Target:  5'- cGGGGGggUauuaaggcagggGCAGCuc-GCCCCCGuGCc -3'
miRNA:   3'- -UUCCCuuA------------UGUCGcuaCGGGGGCuUG- -5'
5181 3' -55 NC_001798.1 + 154116 0.67 0.878518
Target:  5'- cGGGGAccccgGCGGCGggGaCCCCGGcgGCg -3'
miRNA:   3'- uUCCCUua---UGUCGCuaCgGGGGCU--UG- -5'
5181 3' -55 NC_001798.1 + 107430 0.67 0.878518
Target:  5'- -cGGGggUcgccGCGGCGAccccGCgCCCCGAc- -3'
miRNA:   3'- uuCCCuuA----UGUCGCUa---CG-GGGGCUug -5'
5181 3' -55 NC_001798.1 + 28860 0.67 0.882843
Target:  5'- cGAGGGcggccucggcCGGCGGaGCCCCgGAGCu -3'
miRNA:   3'- -UUCCCuuau------GUCGCUaCGGGGgCUUG- -5'
5181 3' -55 NC_001798.1 + 43024 0.65 0.929075
Target:  5'- cGGGGGGaGC-GCGG-GgCCCCGGGCg -3'
miRNA:   3'- uUCCCUUaUGuCGCUaCgGGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.