miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 135207 0.66 0.795917
Target:  5'- gCCGCCCuCGcGGGCCUcggggagGCCGggc-UGCc -3'
miRNA:   3'- -GGUGGGuGC-CCCGGG-------CGGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 15831 0.66 0.796784
Target:  5'- gCCGCCCgguucGgGGGGCCCGaaCGUcGggGUc -3'
miRNA:   3'- -GGUGGG-----UgCCCCGGGCg-GCAaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 123457 0.66 0.796784
Target:  5'- gCGCCCccgaccCGGGGCCCgaaGCCGaccucGUcGCg -3'
miRNA:   3'- gGUGGGu-----GCCCCGGG---CGGCaa---CAaCG- -5'
5181 5' -59.9 NC_001798.1 + 28813 0.66 0.796784
Target:  5'- uCCGCCgC-CGcGGGCCCggGCCGUcgg-GCg -3'
miRNA:   3'- -GGUGG-GuGC-CCCGGG--CGGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 87537 0.66 0.796784
Target:  5'- gCCGCCCACGuGuGGCagaGCaCGUUugUGCu -3'
miRNA:   3'- -GGUGGGUGC-C-CCGgg-CG-GCAAcaACG- -5'
5181 5' -59.9 NC_001798.1 + 108682 0.66 0.782753
Target:  5'- gCCGCCCcCGGGgccGCCCGCgGggacaccgagGCa -3'
miRNA:   3'- -GGUGGGuGCCC---CGGGCGgCaacaa-----CG- -5'
5181 5' -59.9 NC_001798.1 + 31861 0.66 0.780086
Target:  5'- cCCACgCCGCGGagggggcggcGGCCCGCCcccggaagagGCg -3'
miRNA:   3'- -GGUG-GGUGCC----------CCGGGCGGcaacaa----CG- -5'
5181 5' -59.9 NC_001798.1 + 25209 0.66 0.761116
Target:  5'- gCCGcgcCCCGCGGcgcugacccgccGGCCCGCCGagg--GCc -3'
miRNA:   3'- -GGU---GGGUGCC------------CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 135374 0.66 0.770212
Target:  5'- gCUGCUCgGCGGGGUcauggCCGCCGUcUGccUGCa -3'
miRNA:   3'- -GGUGGG-UGCCCCG-----GGCGGCA-ACa-ACG- -5'
5181 5' -59.9 NC_001798.1 + 100833 0.66 0.770212
Target:  5'- uCCaACCCcuuCGGGGCgCuUGCCG-UGggGCu -3'
miRNA:   3'- -GG-UGGGu--GCCCCG-G-GCGGCaACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 59256 0.66 0.770212
Target:  5'- cCCGCaCC-CGGGGCCCGaCGgcgcucucgGUgaagcUGCg -3'
miRNA:   3'- -GGUG-GGuGCCCCGGGCgGCaa-------CA-----ACG- -5'
5181 5' -59.9 NC_001798.1 + 135529 0.66 0.770212
Target:  5'- aCGCCCGCcGGGCCCucgaGgCGUccgUGCg -3'
miRNA:   3'- gGUGGGUGcCCCGGG----CgGCAacaACG- -5'
5181 5' -59.9 NC_001798.1 + 74263 0.66 0.777407
Target:  5'- cCUGCCCGCGGGaacGCCCG-CGUUuaucgccaaggUGCg -3'
miRNA:   3'- -GGUGGGUGCCC---CGGGCgGCAAca---------ACG- -5'
5181 5' -59.9 NC_001798.1 + 1811 0.66 0.778301
Target:  5'- gCugCCGCGagaccacGGGCCCGUCGgcgg-GCc -3'
miRNA:   3'- gGugGGUGC-------CCCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 76894 0.66 0.779194
Target:  5'- cCUGCCCGCGGGGUggaCCgaccuggccgauGCCGUccGggGCc -3'
miRNA:   3'- -GGUGGGUGCCCCG---GG------------CGGCAa-CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 40819 0.66 0.779194
Target:  5'- gCC-CCCugGGGGC-CGCUGguuccGCg -3'
miRNA:   3'- -GGuGGGugCCCCGgGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 43018 0.66 0.779194
Target:  5'- gCCGCCCggggggagcGCGGGGCCC-CgGgcGcaaaUGCg -3'
miRNA:   3'- -GGUGGG---------UGCCCCGGGcGgCaaCa---ACG- -5'
5181 5' -59.9 NC_001798.1 + 53060 0.66 0.779194
Target:  5'- uCCgACCgGCGGGGCCC-CCGa------ -3'
miRNA:   3'- -GG-UGGgUGCCCCGGGcGGCaacaacg -5'
5181 5' -59.9 NC_001798.1 + 62256 0.66 0.779194
Target:  5'- aCCGCCC-CGaGccgaucccaGGCCCGCCGg----GCg -3'
miRNA:   3'- -GGUGGGuGC-C---------CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 54682 0.66 0.779194
Target:  5'- cCCGCUCGCGGcucagcgcgaGG-CCGCCGggGUcuacgacgcggUGCg -3'
miRNA:   3'- -GGUGGGUGCC----------CCgGGCGGCaaCA-----------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.