miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 11230 0.66 0.878245
Target:  5'- gGGGGGcCGUcgGGCCACuGCGGGg-- -3'
miRNA:   3'- gCUCCCaGCAa-CUGGUGcCGCUCgug -5'
5182 3' -57.5 NC_001798.1 + 15561 0.66 0.871122
Target:  5'- --cGGG-CGUUGccgccGCCGCGGCGGGgAg -3'
miRNA:   3'- gcuCCCaGCAAC-----UGGUGCCGCUCgUg -5'
5182 3' -57.5 NC_001798.1 + 146116 0.66 0.871122
Target:  5'- gGGGGGUgG-UGGCgGCGGCGguggaaAGCGg -3'
miRNA:   3'- gCUCCCAgCaACUGgUGCCGC------UCGUg -5'
5182 3' -57.5 NC_001798.1 + 2605 0.66 0.863793
Target:  5'- uCGGGGGgcgCGggGcGCCGCccGGCG-GCGCc -3'
miRNA:   3'- -GCUCCCa--GCaaC-UGGUG--CCGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 22140 0.66 0.863793
Target:  5'- -uGGGGccggCGggGGCCaACGG-GAGCGCg -3'
miRNA:   3'- gcUCCCa---GCaaCUGG-UGCCgCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 74396 0.66 0.861554
Target:  5'- cCGGGGGcCGUggcgccggcggaccUGACCGCcGCGGcccuGCACc -3'
miRNA:   3'- -GCUCCCaGCA--------------ACUGGUGcCGCU----CGUG- -5'
5182 3' -57.5 NC_001798.1 + 31977 0.66 0.856261
Target:  5'- aGGGGGU-GggGGCCAagagGGCG-GCGCc -3'
miRNA:   3'- gCUCCCAgCaaCUGGUg---CCGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 25629 0.66 0.856261
Target:  5'- gGAGuGGUcCGccGAgCGCGGCGGGCu- -3'
miRNA:   3'- gCUC-CCA-GCaaCUgGUGCCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 95323 0.66 0.856261
Target:  5'- uCGGGGG-CGggGcCCACGagcauucgcuguGCGAGCAg -3'
miRNA:   3'- -GCUCCCaGCaaCuGGUGC------------CGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 152069 0.66 0.856261
Target:  5'- aCGGGGGUCccccGACCGCuuaaGCGGGC-Cg -3'
miRNA:   3'- -GCUCCCAGcaa-CUGGUGc---CGCUCGuG- -5'
5182 3' -57.5 NC_001798.1 + 83330 0.66 0.856261
Target:  5'- aCGAGGGcCGcagccauucGGCCGCGGCGucGCccGCg -3'
miRNA:   3'- -GCUCCCaGCaa-------CUGGUGCCGCu-CG--UG- -5'
5182 3' -57.5 NC_001798.1 + 95650 0.66 0.855497
Target:  5'- aCGAGGaugaccacgcggcGUCGUUcggcgguuuggcGGCgGCGGCGGGgGCg -3'
miRNA:   3'- -GCUCC-------------CAGCAA------------CUGgUGCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 68432 0.66 0.848533
Target:  5'- uGGGGGuUCG-UGACUugGcucgcCGAGCACc -3'
miRNA:   3'- gCUCCC-AGCaACUGGugCc----GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 105392 0.66 0.843805
Target:  5'- gGAGGGcggCGUUcuccagggccgccgcGGCCGCGGUGcgcugggccugcAGCACu -3'
miRNA:   3'- gCUCCCa--GCAA---------------CUGGUGCCGC------------UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 149978 0.66 0.840615
Target:  5'- aCGGGGGcgCGgcGcccgcggacGCCGgGGCGAGCGg -3'
miRNA:   3'- -GCUCCCa-GCaaC---------UGGUgCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 68890 0.66 0.840615
Target:  5'- uCGuGGGgaaacacgugCGUgugGACCAUGGCGcGCAg -3'
miRNA:   3'- -GCuCCCa---------GCAa--CUGGUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 40220 0.67 0.832514
Target:  5'- -cGGGGUCGgca--CACGGC-AGCACa -3'
miRNA:   3'- gcUCCCAGCaacugGUGCCGcUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 152042 0.67 0.81579
Target:  5'- aGAGGGUCGggGG--GCGGC--GCACg -3'
miRNA:   3'- gCUCCCAGCaaCUggUGCCGcuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 52341 0.67 0.807181
Target:  5'- -cGGGGUCGUg----GCGGCcGAGCACg -3'
miRNA:   3'- gcUCCCAGCAacuggUGCCG-CUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 111898 0.67 0.807181
Target:  5'- cCGGGGGagGUgcgccugGGCCAgGGCGAaUACg -3'
miRNA:   3'- -GCUCCCagCAa------CUGGUgCCGCUcGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.