miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 103382 1.09 0.002438
Target:  5'- cCGAGGGUCGUUGACCACGGCGAGCACc -3'
miRNA:   3'- -GCUCCCAGCAACUGGUGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 110536 0.77 0.31304
Target:  5'- uGGGGGUCGUUaugauuaccgcGGCCcUGGCGGGCAUc -3'
miRNA:   3'- gCUCCCAGCAA-----------CUGGuGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 81091 0.76 0.357565
Target:  5'- gCGGGGGaCGUUc-UCGCGGCGAGCGCc -3'
miRNA:   3'- -GCUCCCaGCAAcuGGUGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 78564 0.75 0.373361
Target:  5'- gCGGGaGG-CGcUGGCCGCGcGCGAGCGCc -3'
miRNA:   3'- -GCUC-CCaGCaACUGGUGC-CGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 4087 0.75 0.373361
Target:  5'- gCGGGGGUCcg-GGCCGgGGCGGGCuCg -3'
miRNA:   3'- -GCUCCCAGcaaCUGGUgCCGCUCGuG- -5'
5182 3' -57.5 NC_001798.1 + 41522 0.74 0.414873
Target:  5'- aCGAGGGcgguaUCGUUGugCGCcccGGCGgGGCGCa -3'
miRNA:   3'- -GCUCCC-----AGCAACugGUG---CCGC-UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 26506 0.74 0.414873
Target:  5'- -cGGGGaCGgugcUGGCCGCGGCGGGCGg -3'
miRNA:   3'- gcUCCCaGCa---ACUGGUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 59662 0.73 0.46549
Target:  5'- aGAGGGggGgcGACUcggcucgcguggggGCGGCGGGCACg -3'
miRNA:   3'- gCUCCCagCaaCUGG--------------UGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 11440 0.73 0.468243
Target:  5'- -cGGGGUUGUaaaucUGGCCGCGG-GGGCGCc -3'
miRNA:   3'- gcUCCCAGCA-----ACUGGUGCCgCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 107429 0.73 0.486807
Target:  5'- aCGGGGGUC----GCCGCGGCGAccccGCGCc -3'
miRNA:   3'- -GCUCCCAGcaacUGGUGCCGCU----CGUG- -5'
5182 3' -57.5 NC_001798.1 + 44308 0.73 0.486807
Target:  5'- gCGGGGG-CGUuguggacgaUGGCCACGGUGAGaGCc -3'
miRNA:   3'- -GCUCCCaGCA---------ACUGGUGCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 113478 0.72 0.515281
Target:  5'- uGGGGGUUGUgcgUGAUCAUGgGCG-GCGCg -3'
miRNA:   3'- gCUCCCAGCA---ACUGGUGC-CGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 114790 0.72 0.515281
Target:  5'- uCGAGGccuggcUCGUggaccUGACCACGGCGAcGCAg -3'
miRNA:   3'- -GCUCCc-----AGCA-----ACUGGUGCCGCU-CGUg -5'
5182 3' -57.5 NC_001798.1 + 143757 0.72 0.534634
Target:  5'- gCGAGGGUCGggccUGAUCGCGuucUGGGCAUg -3'
miRNA:   3'- -GCUCCCAGCa---ACUGGUGCc--GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 122828 0.72 0.554238
Target:  5'- aGGGcGGUCGggGGCgGCGGCG-GCGg -3'
miRNA:   3'- gCUC-CCAGCaaCUGgUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 107866 0.71 0.574048
Target:  5'- gCGGGGGUUcggGGCCAgGGCuGGCACc -3'
miRNA:   3'- -GCUCCCAGcaaCUGGUgCCGcUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 4418 0.71 0.614094
Target:  5'- cCGGGGGUCGcggcgacaggcUGGCCAUGGggucCGGGUACg -3'
miRNA:   3'- -GCUCCCAGCa----------ACUGGUGCC----GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 4186 0.71 0.614094
Target:  5'- cCGAGGGUCcc-GcCCGCGGCGuggucugcGGCGCu -3'
miRNA:   3'- -GCUCCCAGcaaCuGGUGCCGC--------UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 31050 0.7 0.624156
Target:  5'- gCGGGGGUCG--GGCgGgGGuCGGGCACu -3'
miRNA:   3'- -GCUCCCAGCaaCUGgUgCC-GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 152222 0.7 0.624156
Target:  5'- cCGGGGGUCu---GCCGCGGCGGcCGCu -3'
miRNA:   3'- -GCUCCCAGcaacUGGUGCCGCUcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.