miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 47861 0.7 0.634224
Target:  5'- cCGGGGGcccCGUgGGCgC-CGGCGGGCGCu -3'
miRNA:   3'- -GCUCCCa--GCAaCUG-GuGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 22775 0.7 0.64429
Target:  5'- aCGGGGGaCGUcuccgGGCCGCGGCGGagACg -3'
miRNA:   3'- -GCUCCCaGCAa----CUGGUGCCGCUcgUG- -5'
5182 3' -57.5 NC_001798.1 + 52619 0.7 0.64429
Target:  5'- aCGGcGGGUCGacGGCCcccgaGGUGGGCACg -3'
miRNA:   3'- -GCU-CCCAGCaaCUGGug---CCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 96969 0.7 0.654347
Target:  5'- gCGcuGG-CGcgGACCGCGGCGGGCGg -3'
miRNA:   3'- -GCucCCaGCaaCUGGUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 78951 0.7 0.654347
Target:  5'- -uGGGGUCGcuUUGGCCGCguccgGGgGGGCGCc -3'
miRNA:   3'- gcUCCCAGC--AACUGGUG-----CCgCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 2353 0.7 0.664386
Target:  5'- gCGGGuGGUcCGUgagcucGGCCACGGCccgcgGGGCGCa -3'
miRNA:   3'- -GCUC-CCA-GCAa-----CUGGUGCCG-----CUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 42218 0.7 0.664386
Target:  5'- cCGcGGGUCGgcGugCGCGGCGAcgaACg -3'
miRNA:   3'- -GCuCCCAGCaaCugGUGCCGCUcg-UG- -5'
5182 3' -57.5 NC_001798.1 + 137474 0.7 0.674401
Target:  5'- gCGGGGGUUGgggaggggGGCCGgGGCaGAGcCGCg -3'
miRNA:   3'- -GCUCCCAGCaa------CUGGUgCCG-CUC-GUG- -5'
5182 3' -57.5 NC_001798.1 + 134986 0.7 0.674401
Target:  5'- uGGGGGcC--UGGcCCGCGGUGGGCGCc -3'
miRNA:   3'- gCUCCCaGcaACU-GGUGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 2227 0.7 0.674401
Target:  5'- cCGAGGcG-CGcagcgGGCCgaagGCGGCGGGCGCg -3'
miRNA:   3'- -GCUCC-CaGCaa---CUGG----UGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 72672 0.69 0.684382
Target:  5'- aCGAGGGUaaCGUgcUGGCCgucguGCGGCGGGaaaucCACg -3'
miRNA:   3'- -GCUCCCA--GCA--ACUGG-----UGCCGCUC-----GUG- -5'
5182 3' -57.5 NC_001798.1 + 34733 0.69 0.684382
Target:  5'- gCGAGGGUCG--GGCC-CGG-GAGCGg -3'
miRNA:   3'- -GCUCCCAGCaaCUGGuGCCgCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 15366 0.69 0.694321
Target:  5'- gGGGGGaaUCGgccgUGGgCGCGGCGgaGGCGCc -3'
miRNA:   3'- gCUCCC--AGCa---ACUgGUGCCGC--UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 28626 0.69 0.694321
Target:  5'- aCGGGGGUCcugGGCgCGCGaGCGGGC-Cg -3'
miRNA:   3'- -GCUCCCAGcaaCUG-GUGC-CGCUCGuG- -5'
5182 3' -57.5 NC_001798.1 + 26985 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26955 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26911 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26821 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26881 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26851 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.