miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 56 0.67 0.79842
Target:  5'- gGGGGGgcgcgaaggCGggcGGCgGCGGCGGGCGg -3'
miRNA:   3'- gCUCCCa--------GCaa-CUGgUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 154394 0.67 0.79842
Target:  5'- gGGGGGgcgcgaaggCGggcGGCgGCGGCGGGCGg -3'
miRNA:   3'- gCUCCCa--------GCaa-CUGgUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 3319 0.68 0.789513
Target:  5'- -cGGGG-CGgcGGCgGCGGCGGGCu- -3'
miRNA:   3'- gcUCCCaGCaaCUGgUGCCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 36436 0.68 0.780468
Target:  5'- -cGGGGUCGggG-UCGCGGCGGGgAa -3'
miRNA:   3'- gcUCCCAGCaaCuGGUGCCGCUCgUg -5'
5182 3' -57.5 NC_001798.1 + 10386 0.68 0.780468
Target:  5'- uCGGGGGUCGgggucGGCacaGgGGCGGGCu- -3'
miRNA:   3'- -GCUCCCAGCaa---CUGg--UgCCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 36517 0.68 0.771295
Target:  5'- gCGGGGGcgcgCGgcGGCCG-GGCGGGgGCg -3'
miRNA:   3'- -GCUCCCa---GCaaCUGGUgCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 36559 0.68 0.771295
Target:  5'- gCGGGGGcgcgCGgcGGCCG-GGCGGGgGCg -3'
miRNA:   3'- -GCUCCCa---GCaaCUGGUgCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 36601 0.68 0.771295
Target:  5'- gCGGGGGcgcgCGgcGGCCG-GGCGGGgGCg -3'
miRNA:   3'- -GCUCCCa---GCaaCUGGUgCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 149248 0.68 0.771295
Target:  5'- gGGGGcGUCGccGGCCGgcGCGGGCGCg -3'
miRNA:   3'- gCUCC-CAGCaaCUGGUgcCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 3480 0.68 0.762002
Target:  5'- gCGcGcGGUCGUagcggcggcucaUGGCCACGGCGGcCGCc -3'
miRNA:   3'- -GCuC-CCAGCA------------ACUGGUGCCGCUcGUG- -5'
5182 3' -57.5 NC_001798.1 + 58670 0.68 0.756372
Target:  5'- cCGAGGcccgccaccaccgccGcCGUcagGGCCGCGGCG-GCGCg -3'
miRNA:   3'- -GCUCC---------------CaGCAa--CUGGUGCCGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 10594 0.68 0.74309
Target:  5'- aCGGGGGacUGUauGCUAUGGCGAGCGg -3'
miRNA:   3'- -GCUCCCa-GCAacUGGUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 98566 0.68 0.74309
Target:  5'- uGGGGG-CGcuggUGGCCGCGGUG-GCGu -3'
miRNA:   3'- gCUCCCaGCa---ACUGGUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 126612 0.69 0.733489
Target:  5'- uCGGGGGcUCGgggGGgUACGGCGAGgUGCa -3'
miRNA:   3'- -GCUCCC-AGCaa-CUgGUGCCGCUC-GUG- -5'
5182 3' -57.5 NC_001798.1 + 122131 0.69 0.731558
Target:  5'- cCGGGGGggcccccgGGCCGCGGgCGAGgACg -3'
miRNA:   3'- -GCUCCCagcaa---CUGGUGCC-GCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 2468 0.69 0.723803
Target:  5'- --cGGGUCGggGcCCuCGGCGGGCcgGCg -3'
miRNA:   3'- gcuCCCAGCaaCuGGuGCCGCUCG--UG- -5'
5182 3' -57.5 NC_001798.1 + 87997 0.69 0.723803
Target:  5'- gGGGGGUCGgcauGCgACGGCGucucccgggGGCGCu -3'
miRNA:   3'- gCUCCCAGCaac-UGgUGCCGC---------UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 40578 0.69 0.723803
Target:  5'- gCGAGGGUgCGUaGGCCcgaGGCGGGUc- -3'
miRNA:   3'- -GCUCCCA-GCAaCUGGug-CCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 2503 0.69 0.70421
Target:  5'- cCGcGGGgcgCGgcGGCCGCGGCG-GCGg -3'
miRNA:   3'- -GCuCCCa--GCaaCUGGUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 27015 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.