miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 56 0.67 0.79842
Target:  5'- gGGGGGgcgcgaaggCGggcGGCgGCGGCGGGCGg -3'
miRNA:   3'- gCUCCCa--------GCaa-CUGgUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 2227 0.7 0.674401
Target:  5'- cCGAGGcG-CGcagcgGGCCgaagGCGGCGGGCGCg -3'
miRNA:   3'- -GCUCC-CaGCaa---CUGG----UGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 2353 0.7 0.664386
Target:  5'- gCGGGuGGUcCGUgagcucGGCCACGGCccgcgGGGCGCa -3'
miRNA:   3'- -GCUC-CCA-GCAa-----CUGGUGCCG-----CUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 2468 0.69 0.723803
Target:  5'- --cGGGUCGggGcCCuCGGCGGGCcgGCg -3'
miRNA:   3'- gcuCCCAGCaaCuGGuGCCGCUCG--UG- -5'
5182 3' -57.5 NC_001798.1 + 2503 0.69 0.70421
Target:  5'- cCGcGGGgcgCGgcGGCCGCGGCG-GCGg -3'
miRNA:   3'- -GCuCCCa--GCaaCUGGUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 2605 0.66 0.863793
Target:  5'- uCGGGGGgcgCGggGcGCCGCccGGCG-GCGCc -3'
miRNA:   3'- -GCUCCCa--GCaaC-UGGUG--CCGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 3319 0.68 0.789513
Target:  5'- -cGGGG-CGgcGGCgGCGGCGGGCu- -3'
miRNA:   3'- gcUCCCaGCaaCUGgUGCCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 3480 0.68 0.762002
Target:  5'- gCGcGcGGUCGUagcggcggcucaUGGCCACGGCGGcCGCc -3'
miRNA:   3'- -GCuC-CCAGCA------------ACUGGUGCCGCUcGUG- -5'
5182 3' -57.5 NC_001798.1 + 4087 0.75 0.373361
Target:  5'- gCGGGGGUCcg-GGCCGgGGCGGGCuCg -3'
miRNA:   3'- -GCUCCCAGcaaCUGGUgCCGCUCGuG- -5'
5182 3' -57.5 NC_001798.1 + 4186 0.71 0.614094
Target:  5'- cCGAGGGUCcc-GcCCGCGGCGuggucugcGGCGCu -3'
miRNA:   3'- -GCUCCCAGcaaCuGGUGCCGC--------UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 4418 0.71 0.614094
Target:  5'- cCGGGGGUCGcggcgacaggcUGGCCAUGGggucCGGGUACg -3'
miRNA:   3'- -GCUCCCAGCa----------ACUGGUGCC----GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 10386 0.68 0.780468
Target:  5'- uCGGGGGUCGgggucGGCacaGgGGCGGGCu- -3'
miRNA:   3'- -GCUCCCAGCaa---CUGg--UgCCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 10594 0.68 0.74309
Target:  5'- aCGGGGGacUGUauGCUAUGGCGAGCGg -3'
miRNA:   3'- -GCUCCCa-GCAacUGGUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 11230 0.66 0.878245
Target:  5'- gGGGGGcCGUcgGGCCACuGCGGGg-- -3'
miRNA:   3'- gCUCCCaGCAa-CUGGUGcCGCUCgug -5'
5182 3' -57.5 NC_001798.1 + 11440 0.73 0.468243
Target:  5'- -cGGGGUUGUaaaucUGGCCGCGG-GGGCGCc -3'
miRNA:   3'- gcUCCCAGCA-----ACUGGUGCCgCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 15366 0.69 0.694321
Target:  5'- gGGGGGaaUCGgccgUGGgCGCGGCGgaGGCGCc -3'
miRNA:   3'- gCUCCC--AGCa---ACUgGUGCCGC--UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 15561 0.66 0.871122
Target:  5'- --cGGG-CGUUGccgccGCCGCGGCGGGgAg -3'
miRNA:   3'- gcuCCCaGCAAC-----UGGUGCCGCUCgUg -5'
5182 3' -57.5 NC_001798.1 + 22140 0.66 0.863793
Target:  5'- -uGGGGccggCGggGGCCaACGG-GAGCGCg -3'
miRNA:   3'- gcUCCCa---GCaaCUGG-UGCCgCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 22775 0.7 0.64429
Target:  5'- aCGGGGGaCGUcuccgGGCCGCGGCGGagACg -3'
miRNA:   3'- -GCUCCCaGCAa----CUGGUGCCGCUcgUG- -5'
5182 3' -57.5 NC_001798.1 + 25629 0.66 0.856261
Target:  5'- gGAGuGGUcCGccGAgCGCGGCGGGCu- -3'
miRNA:   3'- gCUC-CCA-GCaaCUgGUGCCGCUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.