miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 44308 0.73 0.486807
Target:  5'- gCGGGGG-CGUuguggacgaUGGCCACGGUGAGaGCc -3'
miRNA:   3'- -GCUCCCaGCA---------ACUGGUGCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 47861 0.7 0.634224
Target:  5'- cCGGGGGcccCGUgGGCgC-CGGCGGGCGCu -3'
miRNA:   3'- -GCUCCCa--GCAaCUG-GuGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 52341 0.67 0.807181
Target:  5'- -cGGGGUCGUg----GCGGCcGAGCACg -3'
miRNA:   3'- gcUCCCAGCAacuggUGCCG-CUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 52619 0.7 0.64429
Target:  5'- aCGGcGGGUCGacGGCCcccgaGGUGGGCACg -3'
miRNA:   3'- -GCU-CCCAGCaaCUGGug---CCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 58670 0.68 0.756372
Target:  5'- cCGAGGcccgccaccaccgccGcCGUcagGGCCGCGGCG-GCGCg -3'
miRNA:   3'- -GCUCC---------------CaGCAa--CUGGUGCCGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 59662 0.73 0.46549
Target:  5'- aGAGGGggGgcGACUcggcucgcguggggGCGGCGGGCACg -3'
miRNA:   3'- gCUCCCagCaaCUGG--------------UGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 68432 0.66 0.848533
Target:  5'- uGGGGGuUCG-UGACUugGcucgcCGAGCACc -3'
miRNA:   3'- gCUCCC-AGCaACUGGugCc----GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 68890 0.66 0.840615
Target:  5'- uCGuGGGgaaacacgugCGUgugGACCAUGGCGcGCAg -3'
miRNA:   3'- -GCuCCCa---------GCAa--CUGGUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 72672 0.69 0.684382
Target:  5'- aCGAGGGUaaCGUgcUGGCCgucguGCGGCGGGaaaucCACg -3'
miRNA:   3'- -GCUCCCA--GCA--ACUGG-----UGCCGCUC-----GUG- -5'
5182 3' -57.5 NC_001798.1 + 74396 0.66 0.861554
Target:  5'- cCGGGGGcCGUggcgccggcggaccUGACCGCcGCGGcccuGCACc -3'
miRNA:   3'- -GCUCCCaGCA--------------ACUGGUGcCGCU----CGUG- -5'
5182 3' -57.5 NC_001798.1 + 78564 0.75 0.373361
Target:  5'- gCGGGaGG-CGcUGGCCGCGcGCGAGCGCc -3'
miRNA:   3'- -GCUC-CCaGCaACUGGUGC-CGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 78951 0.7 0.654347
Target:  5'- -uGGGGUCGcuUUGGCCGCguccgGGgGGGCGCc -3'
miRNA:   3'- gcUCCCAGC--AACUGGUG-----CCgCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 81091 0.76 0.357565
Target:  5'- gCGGGGGaCGUUc-UCGCGGCGAGCGCc -3'
miRNA:   3'- -GCUCCCaGCAAcuGGUGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 83330 0.66 0.856261
Target:  5'- aCGAGGGcCGcagccauucGGCCGCGGCGucGCccGCg -3'
miRNA:   3'- -GCUCCCaGCaa-------CUGGUGCCGCu-CG--UG- -5'
5182 3' -57.5 NC_001798.1 + 87997 0.69 0.723803
Target:  5'- gGGGGGUCGgcauGCgACGGCGucucccgggGGCGCu -3'
miRNA:   3'- gCUCCCAGCaac-UGgUGCCGC---------UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 95323 0.66 0.856261
Target:  5'- uCGGGGG-CGggGcCCACGagcauucgcuguGCGAGCAg -3'
miRNA:   3'- -GCUCCCaGCaaCuGGUGC------------CGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 95650 0.66 0.855497
Target:  5'- aCGAGGaugaccacgcggcGUCGUUcggcgguuuggcGGCgGCGGCGGGgGCg -3'
miRNA:   3'- -GCUCC-------------CAGCAA------------CUGgUGCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 96969 0.7 0.654347
Target:  5'- gCGcuGG-CGcgGACCGCGGCGGGCGg -3'
miRNA:   3'- -GCucCCaGCaaCUGGUGCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 98566 0.68 0.74309
Target:  5'- uGGGGG-CGcuggUGGCCGCGGUG-GCGu -3'
miRNA:   3'- gCUCCCaGCa---ACUGGUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 103382 1.09 0.002438
Target:  5'- cCGAGGGUCGUUGACCACGGCGAGCACc -3'
miRNA:   3'- -GCUCCCAGCAACUGGUGCCGCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.