miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 105392 0.66 0.843805
Target:  5'- gGAGGGcggCGUUcuccagggccgccgcGGCCGCGGUGcgcugggccugcAGCACu -3'
miRNA:   3'- gCUCCCa--GCAA---------------CUGGUGCCGC------------UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 107429 0.73 0.486807
Target:  5'- aCGGGGGUC----GCCGCGGCGAccccGCGCc -3'
miRNA:   3'- -GCUCCCAGcaacUGGUGCCGCU----CGUG- -5'
5182 3' -57.5 NC_001798.1 + 107866 0.71 0.574048
Target:  5'- gCGGGGGUUcggGGCCAgGGCuGGCACc -3'
miRNA:   3'- -GCUCCCAGcaaCUGGUgCCGcUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 110536 0.77 0.31304
Target:  5'- uGGGGGUCGUUaugauuaccgcGGCCcUGGCGGGCAUc -3'
miRNA:   3'- gCUCCCAGCAA-----------CUGGuGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 111898 0.67 0.807181
Target:  5'- cCGGGGGagGUgcgccugGGCCAgGGCGAaUACg -3'
miRNA:   3'- -GCUCCCagCAa------CUGGUgCCGCUcGUG- -5'
5182 3' -57.5 NC_001798.1 + 113478 0.72 0.515281
Target:  5'- uGGGGGUUGUgcgUGAUCAUGgGCG-GCGCg -3'
miRNA:   3'- gCUCCCAGCA---ACUGGUGC-CGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 114790 0.72 0.515281
Target:  5'- uCGAGGccuggcUCGUggaccUGACCACGGCGAcGCAg -3'
miRNA:   3'- -GCUCCc-----AGCA-----ACUGGUGCCGCU-CGUg -5'
5182 3' -57.5 NC_001798.1 + 122131 0.69 0.731558
Target:  5'- cCGGGGGggcccccgGGCCGCGGgCGAGgACg -3'
miRNA:   3'- -GCUCCCagcaa---CUGGUGCC-GCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 122828 0.72 0.554238
Target:  5'- aGGGcGGUCGggGGCgGCGGCG-GCGg -3'
miRNA:   3'- gCUC-CCAGCaaCUGgUGCCGCuCGUg -5'
5182 3' -57.5 NC_001798.1 + 126612 0.69 0.733489
Target:  5'- uCGGGGGcUCGgggGGgUACGGCGAGgUGCa -3'
miRNA:   3'- -GCUCCC-AGCaa-CUgGUGCCGCUC-GUG- -5'
5182 3' -57.5 NC_001798.1 + 134986 0.7 0.674401
Target:  5'- uGGGGGcC--UGGcCCGCGGUGGGCGCc -3'
miRNA:   3'- gCUCCCaGcaACU-GGUGCCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 137474 0.7 0.674401
Target:  5'- gCGGGGGUUGgggaggggGGCCGgGGCaGAGcCGCg -3'
miRNA:   3'- -GCUCCCAGCaa------CUGGUgCCG-CUC-GUG- -5'
5182 3' -57.5 NC_001798.1 + 143757 0.72 0.534634
Target:  5'- gCGAGGGUCGggccUGAUCGCGuucUGGGCAUg -3'
miRNA:   3'- -GCUCCCAGCa---ACUGGUGCc--GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 146116 0.66 0.871122
Target:  5'- gGGGGGUgG-UGGCgGCGGCGguggaaAGCGg -3'
miRNA:   3'- gCUCCCAgCaACUGgUGCCGC------UCGUg -5'
5182 3' -57.5 NC_001798.1 + 149248 0.68 0.771295
Target:  5'- gGGGGcGUCGccGGCCGgcGCGGGCGCg -3'
miRNA:   3'- gCUCC-CAGCaaCUGGUgcCGCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 149978 0.66 0.840615
Target:  5'- aCGGGGGcgCGgcGcccgcggacGCCGgGGCGAGCGg -3'
miRNA:   3'- -GCUCCCa-GCaaC---------UGGUgCCGCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 152042 0.67 0.81579
Target:  5'- aGAGGGUCGggGG--GCGGC--GCACg -3'
miRNA:   3'- gCUCCCAGCaaCUggUGCCGcuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 152069 0.66 0.856261
Target:  5'- aCGGGGGUCccccGACCGCuuaaGCGGGC-Cg -3'
miRNA:   3'- -GCUCCCAGcaa-CUGGUGc---CGCUCGuG- -5'
5182 3' -57.5 NC_001798.1 + 152222 0.7 0.624156
Target:  5'- cCGGGGGUCu---GCCGCGGCGGcCGCu -3'
miRNA:   3'- -GCUCCCAGcaacUGGUGCCGCUcGUG- -5'
5182 3' -57.5 NC_001798.1 + 154394 0.67 0.79842
Target:  5'- gGGGGGgcgcgaaggCGggcGGCgGCGGCGGGCGg -3'
miRNA:   3'- gCUCCCa--------GCaa-CUGgUGCCGCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.