miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 3' -57.5 NC_001798.1 + 42218 0.7 0.664386
Target:  5'- cCGcGGGUCGgcGugCGCGGCGAcgaACg -3'
miRNA:   3'- -GCuCCCAGCaaCugGUGCCGCUcg-UG- -5'
5182 3' -57.5 NC_001798.1 + 41522 0.74 0.414873
Target:  5'- aCGAGGGcgguaUCGUUGugCGCcccGGCGgGGCGCa -3'
miRNA:   3'- -GCUCCC-----AGCAACugGUG---CCGC-UCGUG- -5'
5182 3' -57.5 NC_001798.1 + 40578 0.69 0.723803
Target:  5'- gCGAGGGUgCGUaGGCCcgaGGCGGGUc- -3'
miRNA:   3'- -GCUCCCA-GCAaCUGGug-CCGCUCGug -5'
5182 3' -57.5 NC_001798.1 + 40220 0.67 0.832514
Target:  5'- -cGGGGUCGgca--CACGGC-AGCACa -3'
miRNA:   3'- gcUCCCAGCaacugGUGCCGcUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 36601 0.68 0.771295
Target:  5'- gCGGGGGcgcgCGgcGGCCG-GGCGGGgGCg -3'
miRNA:   3'- -GCUCCCa---GCaaCUGGUgCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 36559 0.68 0.771295
Target:  5'- gCGGGGGcgcgCGgcGGCCG-GGCGGGgGCg -3'
miRNA:   3'- -GCUCCCa---GCaaCUGGUgCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 36517 0.68 0.771295
Target:  5'- gCGGGGGcgcgCGgcGGCCG-GGCGGGgGCg -3'
miRNA:   3'- -GCUCCCa---GCaaCUGGUgCCGCUCgUG- -5'
5182 3' -57.5 NC_001798.1 + 36436 0.68 0.780468
Target:  5'- -cGGGGUCGggG-UCGCGGCGGGgAa -3'
miRNA:   3'- gcUCCCAGCaaCuGGUGCCGCUCgUg -5'
5182 3' -57.5 NC_001798.1 + 34733 0.69 0.684382
Target:  5'- gCGAGGGUCG--GGCC-CGG-GAGCGg -3'
miRNA:   3'- -GCUCCCAGCaaCUGGuGCCgCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 31977 0.66 0.856261
Target:  5'- aGGGGGU-GggGGCCAagagGGCG-GCGCc -3'
miRNA:   3'- gCUCCCAgCaaCUGGUg---CCGCuCGUG- -5'
5182 3' -57.5 NC_001798.1 + 31050 0.7 0.624156
Target:  5'- gCGGGGGUCG--GGCgGgGGuCGGGCACu -3'
miRNA:   3'- -GCUCCCAGCaaCUGgUgCC-GCUCGUG- -5'
5182 3' -57.5 NC_001798.1 + 28626 0.69 0.694321
Target:  5'- aCGGGGGUCcugGGCgCGCGaGCGGGC-Cg -3'
miRNA:   3'- -GCUCCCAGcaaCUG-GUGC-CGCUCGuG- -5'
5182 3' -57.5 NC_001798.1 + 27015 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26985 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26955 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26911 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26881 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26851 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26821 0.69 0.694321
Target:  5'- gCGGGGGUCGggcgGGCgGgGGuCGGGCGg -3'
miRNA:   3'- -GCUCCCAGCaa--CUGgUgCC-GCUCGUg -5'
5182 3' -57.5 NC_001798.1 + 26506 0.74 0.414873
Target:  5'- -cGGGGaCGgugcUGGCCGCGGCGGGCGg -3'
miRNA:   3'- gcUCCCaGCa---ACUGGUGCCGCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.