miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5182 5' -58 NC_001798.1 + 124357 0.67 0.79635
Target:  5'- cCGC-CCGAccaGCGCcgGGUGGcgccUCUGCGUUc -3'
miRNA:   3'- aGCGuGGCU---CGCG--CCACC----AGAUGCAA- -5'
5182 5' -58 NC_001798.1 + 25605 0.67 0.795458
Target:  5'- cCGCGCCGGGgGCGGgccccccccggagUGGUCcGCc-- -3'
miRNA:   3'- aGCGUGGCUCgCGCC-------------ACCAGaUGcaa -5'
5182 5' -58 NC_001798.1 + 52418 0.67 0.787366
Target:  5'- cCGUGCUGGGCGCGGccGUgUACGc- -3'
miRNA:   3'- aGCGUGGCUCGCGCCacCAgAUGCaa -5'
5182 5' -58 NC_001798.1 + 36073 0.67 0.778246
Target:  5'- -gGCugCGGGCGCGGgguaggugGGUggGCGg- -3'
miRNA:   3'- agCGugGCUCGCGCCa-------CCAgaUGCaa -5'
5182 5' -58 NC_001798.1 + 11988 0.67 0.778246
Target:  5'- -gGCugUGGGCGUGGUGcGUCgaGCGa- -3'
miRNA:   3'- agCGugGCUCGCGCCAC-CAGa-UGCaa -5'
5182 5' -58 NC_001798.1 + 133027 0.67 0.759629
Target:  5'- gUCGCGCCGGcCGaGGUGGUC-GCGc- -3'
miRNA:   3'- -AGCGUGGCUcGCgCCACCAGaUGCaa -5'
5182 5' -58 NC_001798.1 + 95522 0.68 0.740572
Target:  5'- cCGCGCCcugGAGCGCGGgcauggcgagUGGUCgaccgACGc- -3'
miRNA:   3'- aGCGUGG---CUCGCGCC----------ACCAGa----UGCaa -5'
5182 5' -58 NC_001798.1 + 9115 0.68 0.740572
Target:  5'- cCGCgggggaGCCGccGCGaGGUGGUCUGCGg- -3'
miRNA:   3'- aGCG------UGGCu-CGCgCCACCAGAUGCaa -5'
5182 5' -58 NC_001798.1 + 15283 0.68 0.7309
Target:  5'- -gGUuCCGGGCgugGCGGUGGUCgcgGCGa- -3'
miRNA:   3'- agCGuGGCUCG---CGCCACCAGa--UGCaa -5'
5182 5' -58 NC_001798.1 + 59461 0.68 0.711314
Target:  5'- cCGCGugcCCGGGCGCGGUGag--GCGUUc -3'
miRNA:   3'- aGCGU---GGCUCGCGCCACcagaUGCAA- -5'
5182 5' -58 NC_001798.1 + 36022 0.68 0.690468
Target:  5'- cCGCGCCuuggcuguuugggGGGUggcgGCGGUGGUCgGCGUg -3'
miRNA:   3'- aGCGUGG-------------CUCG----CGCCACCAGaUGCAa -5'
5182 5' -58 NC_001798.1 + 46335 0.69 0.681464
Target:  5'- aCGCagucGCCGuGCuCGGUGGUCaccUGCGUUa -3'
miRNA:   3'- aGCG----UGGCuCGcGCCACCAG---AUGCAA- -5'
5182 5' -58 NC_001798.1 + 27145 0.69 0.681464
Target:  5'- -gGCACgGGGCGCGGgagggagGGgcugCUGCGa- -3'
miRNA:   3'- agCGUGgCUCGCGCCa------CCa---GAUGCaa -5'
5182 5' -58 NC_001798.1 + 12360 0.71 0.560639
Target:  5'- -gGCugUGGGCGCGGUGG-CUAauCGUc -3'
miRNA:   3'- agCGugGCUCGCGCCACCaGAU--GCAa -5'
5182 5' -58 NC_001798.1 + 39574 0.72 0.492575
Target:  5'- cCGCGCCGAcGCGgGGUGGcgaccccCUugGUUg -3'
miRNA:   3'- aGCGUGGCU-CGCgCCACCa------GAugCAA- -5'
5182 5' -58 NC_001798.1 + 4181 0.77 0.25716
Target:  5'- cCGCGCCGAGggucccgccCGCGGcgUGGUCUGCGg- -3'
miRNA:   3'- aGCGUGGCUC---------GCGCC--ACCAGAUGCaa -5'
5182 5' -58 NC_001798.1 + 103418 1.06 0.003005
Target:  5'- cUCGCACCGAGCGCGGUGGUCUACGUUg -3'
miRNA:   3'- -AGCGUGGCUCGCGCCACCAGAUGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.