miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5184 3' -57.7 NC_001798.1 + 86869 0.66 0.879524
Target:  5'- cCCGGCggcGGUCGCGCUuuucCGcCGCCGg -3'
miRNA:   3'- -GGUCGac-UCAGCGCGGcu--GCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 98276 0.66 0.879524
Target:  5'- -gAGCuUGAGUUGCGCCGcccCGaCugCAg -3'
miRNA:   3'- ggUCG-ACUCAGCGCGGCu--GCaGugGU- -5'
5184 3' -57.7 NC_001798.1 + 46974 0.66 0.879524
Target:  5'- gCC-GCUGGGUgGUGCUGuuguuCGUCGCg- -3'
miRNA:   3'- -GGuCGACUCAgCGCGGCu----GCAGUGgu -5'
5184 3' -57.7 NC_001798.1 + 1352 0.66 0.872475
Target:  5'- gCAGCUccgccGGGccgcCGCGCaCGGCGUCGCg- -3'
miRNA:   3'- gGUCGA-----CUCa---GCGCG-GCUGCAGUGgu -5'
5184 3' -57.7 NC_001798.1 + 124364 0.66 0.872475
Target:  5'- aCCAGCgccGGGUgGCGCCucuGCGUUcugucaucguauACCAg -3'
miRNA:   3'- -GGUCGa--CUCAgCGCGGc--UGCAG------------UGGU- -5'
5184 3' -57.7 NC_001798.1 + 2488 0.66 0.872475
Target:  5'- gCCGGC-GGGUCaGCGCCG-CGgggCGCg- -3'
miRNA:   3'- -GGUCGaCUCAG-CGCGGCuGCa--GUGgu -5'
5184 3' -57.7 NC_001798.1 + 100187 0.66 0.86522
Target:  5'- gCCGGCgggUGAGcgCGCGCaugcucggaGACGUCaugGCCGu -3'
miRNA:   3'- -GGUCG---ACUCa-GCGCGg--------CUGCAG---UGGU- -5'
5184 3' -57.7 NC_001798.1 + 59872 0.66 0.864484
Target:  5'- cCUGGCUGuGGUCGgGCCGGCccgagaguccuggGaCGCCAa -3'
miRNA:   3'- -GGUCGAC-UCAGCgCGGCUG-------------CaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 4496 0.66 0.857764
Target:  5'- cCCAGCggcccGcGUCGCgGUCGuCGUCAUCGu -3'
miRNA:   3'- -GGUCGa----CuCAGCG-CGGCuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 82300 0.66 0.857764
Target:  5'- gCGGUUGGGUCGUGCCcggaGGCccgGUUGCCc -3'
miRNA:   3'- gGUCGACUCAGCGCGG----CUG---CAGUGGu -5'
5184 3' -57.7 NC_001798.1 + 92326 0.66 0.850112
Target:  5'- gCAGCgg---CGaCGCgGACGUCGCCGu -3'
miRNA:   3'- gGUCGacucaGC-GCGgCUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 22399 0.66 0.842271
Target:  5'- cCCGGCgagccgGGG-CGCGgCGGCGUCgAUCGc -3'
miRNA:   3'- -GGUCGa-----CUCaGCGCgGCUGCAG-UGGU- -5'
5184 3' -57.7 NC_001798.1 + 79883 0.66 0.842271
Target:  5'- gCCgAGCUGuacGUCGC-CCu-CGUCGCCAc -3'
miRNA:   3'- -GG-UCGACu--CAGCGcGGcuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 24182 0.66 0.842271
Target:  5'- uUCGGCUGGGgccuggCGCacguggcgGCCGcCGUgGCCAu -3'
miRNA:   3'- -GGUCGACUCa-----GCG--------CGGCuGCAgUGGU- -5'
5184 3' -57.7 NC_001798.1 + 23725 0.66 0.841477
Target:  5'- cCCGGC-GGGUCGagcuggaCGCCGACGcgGCCu -3'
miRNA:   3'- -GGUCGaCUCAGC-------GCGGCUGCagUGGu -5'
5184 3' -57.7 NC_001798.1 + 1285 0.67 0.834247
Target:  5'- aCCAGCgGGGgCGCGUCGcCGUCGg-- -3'
miRNA:   3'- -GGUCGaCUCaGCGCGGCuGCAGUggu -5'
5184 3' -57.7 NC_001798.1 + 36118 0.67 0.834247
Target:  5'- cCCGGCUGcGUCuCGCCG-CGauccCGCCGg -3'
miRNA:   3'- -GGUCGACuCAGcGCGGCuGCa---GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 5400 0.67 0.834247
Target:  5'- gCCcGUUG-GUCGCGCCGcCGcCGCUc -3'
miRNA:   3'- -GGuCGACuCAGCGCGGCuGCaGUGGu -5'
5184 3' -57.7 NC_001798.1 + 79944 0.67 0.825217
Target:  5'- cCCAGCUGGgcugggcGUCcggagcggcgGCGCCG-CGUcCGCCGc -3'
miRNA:   3'- -GGUCGACU-------CAG----------CGCGGCuGCA-GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 56583 0.67 0.815134
Target:  5'- gCCGGCgagGAGUCGUcccccaggaaccagGCaaACGUCACCc -3'
miRNA:   3'- -GGUCGa--CUCAGCG--------------CGgcUGCAGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.