miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5184 3' -57.7 NC_001798.1 + 1285 0.67 0.834247
Target:  5'- aCCAGCgGGGgCGCGUCGcCGUCGg-- -3'
miRNA:   3'- -GGUCGaCUCaGCGCGGCuGCAGUggu -5'
5184 3' -57.7 NC_001798.1 + 36118 0.67 0.834247
Target:  5'- cCCGGCUGcGUCuCGCCG-CGauccCGCCGg -3'
miRNA:   3'- -GGUCGACuCAGcGCGGCuGCa---GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 5400 0.67 0.834247
Target:  5'- gCCcGUUG-GUCGCGCCGcCGcCGCUc -3'
miRNA:   3'- -GGuCGACuCAGCGCGGCuGCaGUGGu -5'
5184 3' -57.7 NC_001798.1 + 49047 0.68 0.745578
Target:  5'- gUCGGCUGAGUCagGCccaGCUGAUGcccUCGCCGc -3'
miRNA:   3'- -GGUCGACUCAG--CG---CGGCUGC---AGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 145546 0.68 0.736047
Target:  5'- cCCGGCcGcccgcGUCGCGCCGGCGcCcCCu -3'
miRNA:   3'- -GGUCGaCu----CAGCGCGGCUGCaGuGGu -5'
5184 3' -57.7 NC_001798.1 + 136006 0.68 0.736047
Target:  5'- -gGGCgggGAGUCG-GUCGGCGUCcCCGu -3'
miRNA:   3'- ggUCGa--CUCAGCgCGGCUGCAGuGGU- -5'
5184 3' -57.7 NC_001798.1 + 131720 0.68 0.736047
Target:  5'- --cGCUGAGUCaggguUGCCGAcuuCGUCACCu -3'
miRNA:   3'- gguCGACUCAGc----GCGGCU---GCAGUGGu -5'
5184 3' -57.7 NC_001798.1 + 67851 0.68 0.736047
Target:  5'- gCAGgaGAGUgGCGCCGucaaGUCcCCGa -3'
miRNA:   3'- gGUCgaCUCAgCGCGGCug--CAGuGGU- -5'
5184 3' -57.7 NC_001798.1 + 4361 0.68 0.745578
Target:  5'- gCCGGCgGGGggCGCGCCGGCGgCGgUg -3'
miRNA:   3'- -GGUCGaCUCa-GCGCGGCUGCaGUgGu -5'
5184 3' -57.7 NC_001798.1 + 125368 0.68 0.745578
Target:  5'- gCCccCUGAGUUGCGCCGGC---ACCAg -3'
miRNA:   3'- -GGucGACUCAGCGCGGCUGcagUGGU- -5'
5184 3' -57.7 NC_001798.1 + 73777 0.68 0.755014
Target:  5'- gCCAGg-GGGaUCGCGauauCGugGUCACCGg -3'
miRNA:   3'- -GGUCgaCUC-AGCGCg---GCugCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 11860 0.68 0.755014
Target:  5'- aCCGGCUGGcguucGUCGCGCUGcCGaC-CCAu -3'
miRNA:   3'- -GGUCGACU-----CAGCGCGGCuGCaGuGGU- -5'
5184 3' -57.7 NC_001798.1 + 24402 0.68 0.755014
Target:  5'- cCCcGUUGccGUCgGCGgCGGCGUCGCCGg -3'
miRNA:   3'- -GGuCGACu-CAG-CGCgGCUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 24573 0.68 0.764345
Target:  5'- gCCGGCgcgcgGAGgCGgGCCG-CGUgGCCGu -3'
miRNA:   3'- -GGUCGa----CUCaGCgCGGCuGCAgUGGU- -5'
5184 3' -57.7 NC_001798.1 + 24930 0.68 0.782662
Target:  5'- gCCuGCUGAGcUC-CGCCGccGCGcCGCCGc -3'
miRNA:   3'- -GGuCGACUC-AGcGCGGC--UGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 139279 0.69 0.687268
Target:  5'- cCCAGCcguccucgGGGgcgcauaGCGCCG-CGUCGCCGc -3'
miRNA:   3'- -GGUCGa-------CUCag-----CGCGGCuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 56257 0.69 0.70697
Target:  5'- cCCGGCcccgGAGUuacCGCaGCCGACGauagcgCACCGa -3'
miRNA:   3'- -GGUCGa---CUCA---GCG-CGGCUGCa-----GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 53458 0.69 0.72643
Target:  5'- gCCAGCUGAGcCGCGCCauccuaGCGcagUACUg -3'
miRNA:   3'- -GGUCGACUCaGCGCGGc-----UGCa--GUGGu -5'
5184 3' -57.7 NC_001798.1 + 29391 0.7 0.657406
Target:  5'- aCCA-CUcaGGGcCGCGCCGGCGgggCGCCGg -3'
miRNA:   3'- -GGUcGA--CUCaGCGCGGCUGCa--GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 124421 0.7 0.647402
Target:  5'- aCgAGCUGccccgcGGUCGCGCgGGcCGUgGCCAg -3'
miRNA:   3'- -GgUCGAC------UCAGCGCGgCU-GCAgUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.