miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5184 3' -57.7 NC_001798.1 + 100490 1.1 0.001929
Target:  5'- aCCAGCUGAGUCGCGCCGACGUCACCAc -3'
miRNA:   3'- -GGUCGACUCAGCGCGGCUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 61201 0.75 0.39327
Target:  5'- aCCGGCg----CGCGCCGGCGguugCACCAa -3'
miRNA:   3'- -GGUCGacucaGCGCGGCUGCa---GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 131917 0.74 0.453718
Target:  5'- gCAGCUGGGcCGCGUCGACGcguugaugcugCGCCu -3'
miRNA:   3'- gGUCGACUCaGCGCGGCUGCa----------GUGGu -5'
5184 3' -57.7 NC_001798.1 + 79152 0.74 0.444771
Target:  5'- -gAGCUGGG-CGCGC--GCGUCACCAa -3'
miRNA:   3'- ggUCGACUCaGCGCGgcUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 121935 0.73 0.471899
Target:  5'- uCCAGC-GGGcCGUGCagGACGUCACCc -3'
miRNA:   3'- -GGUCGaCUCaGCGCGg-CUGCAGUGGu -5'
5184 3' -57.7 NC_001798.1 + 133016 0.72 0.527522
Target:  5'- uCCGGCcgGAcGUCGCGCCGGCcgaggugGUCGCg- -3'
miRNA:   3'- -GGUCGa-CU-CAGCGCGGCUG-------CAGUGgu -5'
5184 3' -57.7 NC_001798.1 + 95691 0.72 0.54792
Target:  5'- gCGGCgGGGgCG-GCCGGCGUCGCCc -3'
miRNA:   3'- gGUCGaCUCaGCgCGGCUGCAGUGGu -5'
5184 3' -57.7 NC_001798.1 + 58424 0.71 0.607348
Target:  5'- gCCAGCgcGAG-CGCGCCcGCaaagGUCACCAc -3'
miRNA:   3'- -GGUCGa-CUCaGCGCGGcUG----CAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 43068 0.71 0.586403
Target:  5'- gCCGGCcGAG-CGCGCCGggcucggGCGcCGCCGc -3'
miRNA:   3'- -GGUCGaCUCaGCGCGGC-------UGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 62554 0.7 0.637387
Target:  5'- gCGGCUauGUCGC-CgGACGUCGCCGc -3'
miRNA:   3'- gGUCGAcuCAGCGcGgCUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 29391 0.7 0.657406
Target:  5'- aCCA-CUcaGGGcCGCGCCGGCGgggCGCCGg -3'
miRNA:   3'- -GGUcGA--CUCaGCGCGGCUGCa--GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 83900 0.7 0.657406
Target:  5'- uCCGGaaGAGUggUGCGCCGcCGcCACCAc -3'
miRNA:   3'- -GGUCgaCUCA--GCGCGGCuGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 153243 0.7 0.647402
Target:  5'- gCGGCgGAGgacccgCGCGCCGcCGcCGCCGc -3'
miRNA:   3'- gGUCGaCUCa-----GCGCGGCuGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 116400 0.7 0.636385
Target:  5'- gCCGGCUGcugcacaacacccAGgcccgCGCgGCCGACGcCGCCGa -3'
miRNA:   3'- -GGUCGAC-------------UCa----GCG-CGGCUGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 124421 0.7 0.647402
Target:  5'- aCgAGCUGccccgcGGUCGCGCgGGcCGUgGCCAg -3'
miRNA:   3'- -GgUCGAC------UCAGCGCGgCU-GCAgUGGU- -5'
5184 3' -57.7 NC_001798.1 + 53458 0.69 0.72643
Target:  5'- gCCAGCUGAGcCGCGCCauccuaGCGcagUACUg -3'
miRNA:   3'- -GGUCGACUCaGCGCGGc-----UGCa--GUGGu -5'
5184 3' -57.7 NC_001798.1 + 56257 0.69 0.70697
Target:  5'- cCCGGCcccgGAGUuacCGCaGCCGACGauagcgCACCGa -3'
miRNA:   3'- -GGUCGa---CUCA---GCG-CGGCUGCa-----GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 139279 0.69 0.687268
Target:  5'- cCCAGCcguccucgGGGgcgcauaGCGCCG-CGUCGCCGc -3'
miRNA:   3'- -GGUCGa-------CUCag-----CGCGGCuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 136006 0.68 0.736047
Target:  5'- -gGGCgggGAGUCG-GUCGGCGUCcCCGu -3'
miRNA:   3'- ggUCGa--CUCAGCgCGGCUGCAGuGGU- -5'
5184 3' -57.7 NC_001798.1 + 145546 0.68 0.736047
Target:  5'- cCCGGCcGcccgcGUCGCGCCGGCGcCcCCu -3'
miRNA:   3'- -GGUCGaCu----CAGCGCGGCUGCaGuGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.