miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5184 3' -57.7 NC_001798.1 + 1285 0.67 0.834247
Target:  5'- aCCAGCgGGGgCGCGUCGcCGUCGg-- -3'
miRNA:   3'- -GGUCGaCUCaGCGCGGCuGCAGUggu -5'
5184 3' -57.7 NC_001798.1 + 1352 0.66 0.872475
Target:  5'- gCAGCUccgccGGGccgcCGCGCaCGGCGUCGCg- -3'
miRNA:   3'- gGUCGA-----CUCa---GCGCG-GCUGCAGUGgu -5'
5184 3' -57.7 NC_001798.1 + 2488 0.66 0.872475
Target:  5'- gCCGGC-GGGUCaGCGCCG-CGgggCGCg- -3'
miRNA:   3'- -GGUCGaCUCAG-CGCGGCuGCa--GUGgu -5'
5184 3' -57.7 NC_001798.1 + 4361 0.68 0.745578
Target:  5'- gCCGGCgGGGggCGCGCCGGCGgCGgUg -3'
miRNA:   3'- -GGUCGaCUCa-GCGCGGCUGCaGUgGu -5'
5184 3' -57.7 NC_001798.1 + 4496 0.66 0.857764
Target:  5'- cCCAGCggcccGcGUCGCgGUCGuCGUCAUCGu -3'
miRNA:   3'- -GGUCGa----CuCAGCG-CGGCuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 5400 0.67 0.834247
Target:  5'- gCCcGUUG-GUCGCGCCGcCGcCGCUc -3'
miRNA:   3'- -GGuCGACuCAGCGCGGCuGCaGUGGu -5'
5184 3' -57.7 NC_001798.1 + 11860 0.68 0.755014
Target:  5'- aCCGGCUGGcguucGUCGCGCUGcCGaC-CCAu -3'
miRNA:   3'- -GGUCGACU-----CAGCGCGGCuGCaGuGGU- -5'
5184 3' -57.7 NC_001798.1 + 22399 0.66 0.842271
Target:  5'- cCCGGCgagccgGGG-CGCGgCGGCGUCgAUCGc -3'
miRNA:   3'- -GGUCGa-----CUCaGCGCgGCUGCAG-UGGU- -5'
5184 3' -57.7 NC_001798.1 + 23725 0.66 0.841477
Target:  5'- cCCGGC-GGGUCGagcuggaCGCCGACGcgGCCu -3'
miRNA:   3'- -GGUCGaCUCAGC-------GCGGCUGCagUGGu -5'
5184 3' -57.7 NC_001798.1 + 24182 0.66 0.842271
Target:  5'- uUCGGCUGGGgccuggCGCacguggcgGCCGcCGUgGCCAu -3'
miRNA:   3'- -GGUCGACUCa-----GCG--------CGGCuGCAgUGGU- -5'
5184 3' -57.7 NC_001798.1 + 24402 0.68 0.755014
Target:  5'- cCCcGUUGccGUCgGCGgCGGCGUCGCCGg -3'
miRNA:   3'- -GGuCGACu-CAG-CGCgGCUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 24573 0.68 0.764345
Target:  5'- gCCGGCgcgcgGAGgCGgGCCG-CGUgGCCGu -3'
miRNA:   3'- -GGUCGa----CUCaGCgCGGCuGCAgUGGU- -5'
5184 3' -57.7 NC_001798.1 + 24930 0.68 0.782662
Target:  5'- gCCuGCUGAGcUC-CGCCGccGCGcCGCCGc -3'
miRNA:   3'- -GGuCGACUC-AGcGCGGC--UGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 29391 0.7 0.657406
Target:  5'- aCCA-CUcaGGGcCGCGCCGGCGgggCGCCGg -3'
miRNA:   3'- -GGUcGA--CUCaGCGCGGCUGCa--GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 36118 0.67 0.834247
Target:  5'- cCCGGCUGcGUCuCGCCG-CGauccCGCCGg -3'
miRNA:   3'- -GGUCGACuCAGcGCGGCuGCa---GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 39627 0.67 0.812577
Target:  5'- gCCGGCgggguuuuggugugGAGUCgGCGCCGcCGggGCCGu -3'
miRNA:   3'- -GGUCGa-------------CUCAG-CGCGGCuGCagUGGU- -5'
5184 3' -57.7 NC_001798.1 + 42695 0.67 0.800461
Target:  5'- aCCGGCgucGGGgaaccagucccCGuCGCCGuCGUCGCCAc -3'
miRNA:   3'- -GGUCGa--CUCa----------GC-GCGGCuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 43068 0.71 0.586403
Target:  5'- gCCGGCcGAG-CGCGCCGggcucggGCGcCGCCGc -3'
miRNA:   3'- -GGUCGaCUCaGCGCGGC-------UGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 46974 0.66 0.879524
Target:  5'- gCC-GCUGGGUgGUGCUGuuguuCGUCGCg- -3'
miRNA:   3'- -GGuCGACUCAgCGCGGCu----GCAGUGgu -5'
5184 3' -57.7 NC_001798.1 + 49047 0.68 0.745578
Target:  5'- gUCGGCUGAGUCagGCccaGCUGAUGcccUCGCCGc -3'
miRNA:   3'- -GGUCGACUCAG--CG---CGGCUGC---AGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.