miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5184 3' -57.7 NC_001798.1 + 82300 0.66 0.857764
Target:  5'- gCGGUUGGGUCGUGCCcggaGGCccgGUUGCCc -3'
miRNA:   3'- gGUCGACUCAGCGCGG----CUG---CAGUGGu -5'
5184 3' -57.7 NC_001798.1 + 79944 0.67 0.825217
Target:  5'- cCCAGCUGGgcugggcGUCcggagcggcgGCGCCG-CGUcCGCCGc -3'
miRNA:   3'- -GGUCGACU-------CAG----------CGCGGCuGCA-GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 79883 0.66 0.842271
Target:  5'- gCCgAGCUGuacGUCGC-CCu-CGUCGCCAc -3'
miRNA:   3'- -GG-UCGACu--CAGCGcGGcuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 79152 0.74 0.444771
Target:  5'- -gAGCUGGG-CGCGC--GCGUCACCAa -3'
miRNA:   3'- ggUCGACUCaGCGCGgcUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 73777 0.68 0.755014
Target:  5'- gCCAGg-GGGaUCGCGauauCGugGUCACCGg -3'
miRNA:   3'- -GGUCgaCUC-AGCGCg---GCugCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 67851 0.68 0.736047
Target:  5'- gCAGgaGAGUgGCGCCGucaaGUCcCCGa -3'
miRNA:   3'- gGUCgaCUCAgCGCGGCug--CAGuGGU- -5'
5184 3' -57.7 NC_001798.1 + 62554 0.7 0.637387
Target:  5'- gCGGCUauGUCGC-CgGACGUCGCCGc -3'
miRNA:   3'- gGUCGAcuCAGCGcGgCUGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 61201 0.75 0.39327
Target:  5'- aCCGGCg----CGCGCCGGCGguugCACCAa -3'
miRNA:   3'- -GGUCGacucaGCGCGGCUGCa---GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 59872 0.66 0.864484
Target:  5'- cCUGGCUGuGGUCGgGCCGGCccgagaguccuggGaCGCCAa -3'
miRNA:   3'- -GGUCGAC-UCAGCgCGGCUG-------------CaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 58424 0.71 0.607348
Target:  5'- gCCAGCgcGAG-CGCGCCcGCaaagGUCACCAc -3'
miRNA:   3'- -GGUCGa-CUCaGCGCGGcUG----CAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 56583 0.67 0.815134
Target:  5'- gCCGGCgagGAGUCGUcccccaggaaccagGCaaACGUCACCc -3'
miRNA:   3'- -GGUCGa--CUCAGCG--------------CGgcUGCAGUGGu -5'
5184 3' -57.7 NC_001798.1 + 56257 0.69 0.70697
Target:  5'- cCCGGCcccgGAGUuacCGCaGCCGACGauagcgCACCGa -3'
miRNA:   3'- -GGUCGa---CUCA---GCG-CGGCUGCa-----GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 53458 0.69 0.72643
Target:  5'- gCCAGCUGAGcCGCGCCauccuaGCGcagUACUg -3'
miRNA:   3'- -GGUCGACUCaGCGCGGc-----UGCa--GUGGu -5'
5184 3' -57.7 NC_001798.1 + 49047 0.68 0.745578
Target:  5'- gUCGGCUGAGUCagGCccaGCUGAUGcccUCGCCGc -3'
miRNA:   3'- -GGUCGACUCAG--CG---CGGCUGC---AGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 46974 0.66 0.879524
Target:  5'- gCC-GCUGGGUgGUGCUGuuguuCGUCGCg- -3'
miRNA:   3'- -GGuCGACUCAgCGCGGCu----GCAGUGgu -5'
5184 3' -57.7 NC_001798.1 + 43068 0.71 0.586403
Target:  5'- gCCGGCcGAG-CGCGCCGggcucggGCGcCGCCGc -3'
miRNA:   3'- -GGUCGaCUCaGCGCGGC-------UGCaGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 42695 0.67 0.800461
Target:  5'- aCCGGCgucGGGgaaccagucccCGuCGCCGuCGUCGCCAc -3'
miRNA:   3'- -GGUCGa--CUCa----------GC-GCGGCuGCAGUGGU- -5'
5184 3' -57.7 NC_001798.1 + 39627 0.67 0.812577
Target:  5'- gCCGGCgggguuuuggugugGAGUCgGCGCCGcCGggGCCGu -3'
miRNA:   3'- -GGUCGa-------------CUCAG-CGCGGCuGCagUGGU- -5'
5184 3' -57.7 NC_001798.1 + 36118 0.67 0.834247
Target:  5'- cCCGGCUGcGUCuCGCCG-CGauccCGCCGg -3'
miRNA:   3'- -GGUCGACuCAGcGCGGCuGCa---GUGGU- -5'
5184 3' -57.7 NC_001798.1 + 29391 0.7 0.657406
Target:  5'- aCCA-CUcaGGGcCGCGCCGGCGgggCGCCGg -3'
miRNA:   3'- -GGUcGA--CUCaGCGCGGCUGCa--GUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.