Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5184 | 3' | -57.7 | NC_001798.1 | + | 100490 | 1.1 | 0.001929 |
Target: 5'- aCCAGCUGAGUCGCGCCGACGUCACCAc -3' miRNA: 3'- -GGUCGACUCAGCGCGGCUGCAGUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 79883 | 0.66 | 0.842271 |
Target: 5'- gCCgAGCUGuacGUCGC-CCu-CGUCGCCAc -3' miRNA: 3'- -GG-UCGACu--CAGCGcGGcuGCAGUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 24182 | 0.66 | 0.842271 |
Target: 5'- uUCGGCUGGGgccuggCGCacguggcgGCCGcCGUgGCCAu -3' miRNA: 3'- -GGUCGACUCa-----GCG--------CGGCuGCAgUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 23725 | 0.66 | 0.841477 |
Target: 5'- cCCGGC-GGGUCGagcuggaCGCCGACGcgGCCu -3' miRNA: 3'- -GGUCGaCUCAGC-------GCGGCUGCagUGGu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 5400 | 0.67 | 0.834247 |
Target: 5'- gCCcGUUG-GUCGCGCCGcCGcCGCUc -3' miRNA: 3'- -GGuCGACuCAGCGCGGCuGCaGUGGu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 36118 | 0.67 | 0.834247 |
Target: 5'- cCCGGCUGcGUCuCGCCG-CGauccCGCCGg -3' miRNA: 3'- -GGUCGACuCAGcGCGGCuGCa---GUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 1285 | 0.67 | 0.834247 |
Target: 5'- aCCAGCgGGGgCGCGUCGcCGUCGg-- -3' miRNA: 3'- -GGUCGaCUCaGCGCGGCuGCAGUggu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 79944 | 0.67 | 0.825217 |
Target: 5'- cCCAGCUGGgcugggcGUCcggagcggcgGCGCCG-CGUcCGCCGc -3' miRNA: 3'- -GGUCGACU-------CAG----------CGCGGCuGCA-GUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 56583 | 0.67 | 0.815134 |
Target: 5'- gCCGGCgagGAGUCGUcccccaggaaccagGCaaACGUCACCc -3' miRNA: 3'- -GGUCGa--CUCAGCG--------------CGgcUGCAGUGGu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 22399 | 0.66 | 0.842271 |
Target: 5'- cCCGGCgagccgGGG-CGCGgCGGCGUCgAUCGc -3' miRNA: 3'- -GGUCGa-----CUCaGCGCgGCUGCAG-UGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 92326 | 0.66 | 0.850112 |
Target: 5'- gCAGCgg---CGaCGCgGACGUCGCCGu -3' miRNA: 3'- gGUCGacucaGC-GCGgCUGCAGUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 82300 | 0.66 | 0.857764 |
Target: 5'- gCGGUUGGGUCGUGCCcggaGGCccgGUUGCCc -3' miRNA: 3'- gGUCGACUCAGCGCGG----CUG---CAGUGGu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 98276 | 0.66 | 0.879524 |
Target: 5'- -gAGCuUGAGUUGCGCCGcccCGaCugCAg -3' miRNA: 3'- ggUCG-ACUCAGCGCGGCu--GCaGugGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 46974 | 0.66 | 0.879524 |
Target: 5'- gCC-GCUGGGUgGUGCUGuuguuCGUCGCg- -3' miRNA: 3'- -GGuCGACUCAgCGCGGCu----GCAGUGgu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 2488 | 0.66 | 0.872475 |
Target: 5'- gCCGGC-GGGUCaGCGCCG-CGgggCGCg- -3' miRNA: 3'- -GGUCGaCUCAG-CGCGGCuGCa--GUGgu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 124364 | 0.66 | 0.872475 |
Target: 5'- aCCAGCgccGGGUgGCGCCucuGCGUUcugucaucguauACCAg -3' miRNA: 3'- -GGUCGa--CUCAgCGCGGc--UGCAG------------UGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 1352 | 0.66 | 0.872475 |
Target: 5'- gCAGCUccgccGGGccgcCGCGCaCGGCGUCGCg- -3' miRNA: 3'- gGUCGA-----CUCa---GCGCG-GCUGCAGUGgu -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 100187 | 0.66 | 0.86522 |
Target: 5'- gCCGGCgggUGAGcgCGCGCaugcucggaGACGUCaugGCCGu -3' miRNA: 3'- -GGUCG---ACUCa-GCGCGg--------CUGCAG---UGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 59872 | 0.66 | 0.864484 |
Target: 5'- cCUGGCUGuGGUCGgGCCGGCccgagaguccuggGaCGCCAa -3' miRNA: 3'- -GGUCGAC-UCAGCgCGGCUG-------------CaGUGGU- -5' |
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5184 | 3' | -57.7 | NC_001798.1 | + | 4496 | 0.66 | 0.857764 |
Target: 5'- cCCAGCggcccGcGUCGCgGUCGuCGUCAUCGu -3' miRNA: 3'- -GGUCGa----CuCAGCG-CGGCuGCAGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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