miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5184 5' -50.3 NC_001798.1 + 86216 0.66 0.993502
Target:  5'- -cCAgccCGACCUGGACcUgggcccgcugauggcCACCGUGCUg -3'
miRNA:   3'- aaGUa--GCUGGACUUGuA---------------GUGGUACGA- -5'
5184 5' -50.3 NC_001798.1 + 108722 0.67 0.988028
Target:  5'- -aCGaCGaACCUGAGCAUCGCgCAucUGCa -3'
miRNA:   3'- aaGUaGC-UGGACUUGUAGUG-GU--ACGa -5'
5184 5' -50.3 NC_001798.1 + 100181 0.67 0.98639
Target:  5'- -cCGUCGGCCggcgggUGAGCG-CGCgCAUGCUc -3'
miRNA:   3'- aaGUAGCUGG------ACUUGUaGUG-GUACGA- -5'
5184 5' -50.3 NC_001798.1 + 84102 0.68 0.969732
Target:  5'- aUCAUCGGCC-GGGCGUCcagGCCGagGCg -3'
miRNA:   3'- aAGUAGCUGGaCUUGUAG---UGGUa-CGa -5'
5184 5' -50.3 NC_001798.1 + 62080 0.68 0.966504
Target:  5'- -aUAUCGugUUGGACAUCAgCAccgGCUa -3'
miRNA:   3'- aaGUAGCugGACUUGUAGUgGUa--CGA- -5'
5184 5' -50.3 NC_001798.1 + 90882 0.68 0.966504
Target:  5'- cUCGUgGAgCUGGGCggCGCgCAUGCUg -3'
miRNA:   3'- aAGUAgCUgGACUUGuaGUG-GUACGA- -5'
5184 5' -50.3 NC_001798.1 + 99732 0.69 0.96304
Target:  5'- -gCGUCGACCUGGGCGaCugCAUcgGCc -3'
miRNA:   3'- aaGUAGCUGGACUUGUaGugGUA--CGa -5'
5184 5' -50.3 NC_001798.1 + 53515 0.69 0.954971
Target:  5'- -cCAgCGGCCUGGACAUCcccgacgACCcgGCg -3'
miRNA:   3'- aaGUaGCUGGACUUGUAG-------UGGuaCGa -5'
5184 5' -50.3 NC_001798.1 + 138958 0.7 0.941985
Target:  5'- -gCGUCGuCCUGAgcguGCAUCGCCAcGUg -3'
miRNA:   3'- aaGUAGCuGGACU----UGUAGUGGUaCGa -5'
5184 5' -50.3 NC_001798.1 + 25979 0.7 0.936997
Target:  5'- -----gGACCUGcGCcgCACCGUGCUg -3'
miRNA:   3'- aaguagCUGGACuUGuaGUGGUACGA- -5'
5184 5' -50.3 NC_001798.1 + 65628 0.7 0.926222
Target:  5'- cUUCAUucugagcaCGGCCcGAACGUCGCUGUGCc -3'
miRNA:   3'- -AAGUA--------GCUGGaCUUGUAGUGGUACGa -5'
5184 5' -50.3 NC_001798.1 + 100527 1.06 0.012652
Target:  5'- cUUCAUCGACCUGAACAUCACCAUGCUg -3'
miRNA:   3'- -AAGUAGCUGGACUUGUAGUGGUACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.