miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5185 3' -55.6 NC_001798.1 + 154422 0.66 0.922441
Target:  5'- -cGG-GCGGGCgGCAGGGcagccCCGCGcGCc -3'
miRNA:   3'- caCCaCGCUCGaCGUCUU-----GGUGCuCG- -5'
5185 3' -55.6 NC_001798.1 + 84 0.66 0.922441
Target:  5'- -cGG-GCGGGCgGCAGGGcagccCCGCGcGCc -3'
miRNA:   3'- caCCaCGCUCGaCGUCUU-----GGUGCuCG- -5'
5185 3' -55.6 NC_001798.1 + 112401 0.66 0.922441
Target:  5'- gGUGGUGCaGGGUggugGCAuagcuGAGCUccauggccgGCGAGCc -3'
miRNA:   3'- -CACCACG-CUCGa---CGU-----CUUGG---------UGCUCG- -5'
5185 3' -55.6 NC_001798.1 + 72332 0.66 0.922441
Target:  5'- -cGGgGgGuGCUGCAGGAgCucgcCGAGCg -3'
miRNA:   3'- caCCaCgCuCGACGUCUUgGu---GCUCG- -5'
5185 3' -55.6 NC_001798.1 + 90120 0.66 0.916753
Target:  5'- gGUGGgacucgGgGAGgUcGCAGGAUC-CGAGCg -3'
miRNA:   3'- -CACCa-----CgCUCgA-CGUCUUGGuGCUCG- -5'
5185 3' -55.6 NC_001798.1 + 49841 0.66 0.916753
Target:  5'- cUGGUGCGAaguGCggcgGCGGAggaACC-CGGGg -3'
miRNA:   3'- cACCACGCU---CGa---CGUCU---UGGuGCUCg -5'
5185 3' -55.6 NC_001798.1 + 3320 0.66 0.916753
Target:  5'- -gGGgcgGCGgcGGCgGCGGGcuucCCGCGGGCg -3'
miRNA:   3'- caCCa--CGC--UCGaCGUCUu---GGUGCUCG- -5'
5185 3' -55.6 NC_001798.1 + 17915 0.66 0.916171
Target:  5'- aUGGUGuCGAGCUcuuccggGguGAACCcCGuGGCc -3'
miRNA:   3'- cACCAC-GCUCGA-------CguCUUGGuGC-UCG- -5'
5185 3' -55.6 NC_001798.1 + 2248 0.66 0.914409
Target:  5'- -aGGcgGCGGGCgcgccgccgggggGCGGGGCgGCGcAGCg -3'
miRNA:   3'- caCCa-CGCUCGa------------CGUCUUGgUGC-UCG- -5'
5185 3' -55.6 NC_001798.1 + 91243 0.66 0.910822
Target:  5'- -aGGUGgGGGUUGUAGAaguucuGCCgGCG-GCa -3'
miRNA:   3'- caCCACgCUCGACGUCU------UGG-UGCuCG- -5'
5185 3' -55.6 NC_001798.1 + 2474 0.66 0.910822
Target:  5'- -gGGgcccucgGCGGGCcgGCGGGucagcGCCGCGGGg -3'
miRNA:   3'- caCCa------CGCUCGa-CGUCU-----UGGUGCUCg -5'
5185 3' -55.6 NC_001798.1 + 29380 0.66 0.910822
Target:  5'- -cGGggGCGGGCaccacuCAGGGCCGCGccGGCg -3'
miRNA:   3'- caCCa-CGCUCGac----GUCUUGGUGC--UCG- -5'
5185 3' -55.6 NC_001798.1 + 71977 0.66 0.910822
Target:  5'- gGUGGUcgGgGAcgcGCUG-AGGGCCACGuGCa -3'
miRNA:   3'- -CACCA--CgCU---CGACgUCUUGGUGCuCG- -5'
5185 3' -55.6 NC_001798.1 + 150094 0.66 0.910822
Target:  5'- -aGGgGCGAGC-GCGGGGCgGCGgaggaagaGGCg -3'
miRNA:   3'- caCCaCGCUCGaCGUCUUGgUGC--------UCG- -5'
5185 3' -55.6 NC_001798.1 + 86316 0.66 0.908996
Target:  5'- cUGGUGCGGGCcuacuggcuggccaUGCGacGCCugaGGGCg -3'
miRNA:   3'- cACCACGCUCG--------------ACGUcuUGGug-CUCG- -5'
5185 3' -55.6 NC_001798.1 + 76604 0.66 0.90465
Target:  5'- -cGGggGCGGGCUGUcccccgAG-GCCACGcGCa -3'
miRNA:   3'- caCCa-CGCUCGACG------UCuUGGUGCuCG- -5'
5185 3' -55.6 NC_001798.1 + 27249 0.66 0.90465
Target:  5'- -gGGgagGCG-GCcGCGGGACCGC-AGCc -3'
miRNA:   3'- caCCa--CGCuCGaCGUCUUGGUGcUCG- -5'
5185 3' -55.6 NC_001798.1 + 24133 0.66 0.90465
Target:  5'- cGUGGcGCGGGCcgUGCcccACCugGGGUa -3'
miRNA:   3'- -CACCaCGCUCG--ACGucuUGGugCUCG- -5'
5185 3' -55.6 NC_001798.1 + 22340 0.66 0.90465
Target:  5'- -cGGacgcGCGGGCgucgggGCGGGGCCGCGcauaauGCg -3'
miRNA:   3'- caCCa---CGCUCGa-----CGUCUUGGUGCu-----CG- -5'
5185 3' -55.6 NC_001798.1 + 112938 0.66 0.90465
Target:  5'- -gGGUGgGGGUugugUGUAGAACC-CGcGCg -3'
miRNA:   3'- caCCACgCUCG----ACGUCUUGGuGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.