miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5185 5' -56.3 NC_001798.1 + 10698 0.66 0.911117
Target:  5'- gGGcGCaGGGGaCCGCAGGCauccagggguuccgCGGCCCa -3'
miRNA:   3'- aCCuUG-CUCCgGGCGUUCGa-------------GUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 38433 0.66 0.90871
Target:  5'- cGGGcCGGGGCCCcacauuuauccGguGGgUCAucGCCCu -3'
miRNA:   3'- aCCUuGCUCCGGG-----------CguUCgAGU--UGGG- -5'
5185 5' -56.3 NC_001798.1 + 123391 0.66 0.90871
Target:  5'- aGGcGACGccAGGCCCcccGgGAGCcgCGGCCCc -3'
miRNA:   3'- aCC-UUGC--UCCGGG---CgUUCGa-GUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 142602 0.66 0.90871
Target:  5'- cUGGu-CGAGGuUCUGCGGGaaauucagaUCAGCCCc -3'
miRNA:   3'- -ACCuuGCUCC-GGGCGUUCg--------AGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 4132 0.66 0.90871
Target:  5'- cGGGGCGccgcccccgGGGCCCucGCGGGC---ACCCc -3'
miRNA:   3'- aCCUUGC---------UCCGGG--CGUUCGaguUGGG- -5'
5185 5' -56.3 NC_001798.1 + 20775 0.66 0.90871
Target:  5'- gGGAGCGAcgGcGCCCGCcgcguAGgUCu-CCCg -3'
miRNA:   3'- aCCUUGCU--C-CGGGCGu----UCgAGuuGGG- -5'
5185 5' -56.3 NC_001798.1 + 59718 0.66 0.90871
Target:  5'- uUGGuGGCGucGUCCGCGGGgacaacUUCGGCCCc -3'
miRNA:   3'- -ACC-UUGCucCGGGCGUUC------GAGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 69057 0.66 0.90871
Target:  5'- --aAACGAcacaaGGCCCGCGcGCgcgCAGCCg -3'
miRNA:   3'- accUUGCU-----CCGGGCGUuCGa--GUUGGg -5'
5185 5' -56.3 NC_001798.1 + 88040 0.66 0.90871
Target:  5'- gGGAGgGcAGGgCCGCugggggggcGGGCUCGuCCCc -3'
miRNA:   3'- aCCUUgC-UCCgGGCG---------UUCGAGUuGGG- -5'
5185 5' -56.3 NC_001798.1 + 114507 0.66 0.90871
Target:  5'- cGGGACGGGcauuaGCCUGCAucGC-CAGCUg -3'
miRNA:   3'- aCCUUGCUC-----CGGGCGUu-CGaGUUGGg -5'
5185 5' -56.3 NC_001798.1 + 153289 0.66 0.90871
Target:  5'- cGGGucCGccgucuucguGGGCCCGggcuCGGGCUCgGGCCCg -3'
miRNA:   3'- aCCUu-GC----------UCCGGGC----GUUCGAG-UUGGG- -5'
5185 5' -56.3 NC_001798.1 + 139386 0.66 0.907492
Target:  5'- cGGGACGuccgggcaccAGGUCCGCccccacagCAGCCCg -3'
miRNA:   3'- aCCUUGC----------UCCGGGCGuucga---GUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 46536 0.66 0.906879
Target:  5'- gGGGGgGuGGCCCGgAuGUccagaaacgucacgUCGACCCg -3'
miRNA:   3'- aCCUUgCuCCGGGCgUuCG--------------AGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 30417 0.66 0.902527
Target:  5'- aUGG-ACGcGGCCaCGCccccGGCcCGGCCCc -3'
miRNA:   3'- -ACCuUGCuCCGG-GCGu---UCGaGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 41656 0.66 0.902527
Target:  5'- cUGGAGgGAGcGgaCCGCGAGCauggCGuGCCCg -3'
miRNA:   3'- -ACCUUgCUC-Cg-GGCGUUCGa---GU-UGGG- -5'
5185 5' -56.3 NC_001798.1 + 63298 0.66 0.902527
Target:  5'- aUGGAuc-AGGCCCaGCAGGC--GAUCCg -3'
miRNA:   3'- -ACCUugcUCCGGG-CGUUCGagUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 78566 0.66 0.902527
Target:  5'- gGGAgGCGcuGGCCgcgCGCGAGCgccgGGCCCa -3'
miRNA:   3'- aCCU-UGCu-CCGG---GCGUUCGag--UUGGG- -5'
5185 5' -56.3 NC_001798.1 + 105425 0.66 0.902527
Target:  5'- cGGuGCGcuGGGCCUGCAGcacugccgcccGCUCcGCCg -3'
miRNA:   3'- aCCuUGC--UCCGGGCGUU-----------CGAGuUGGg -5'
5185 5' -56.3 NC_001798.1 + 67291 0.66 0.902527
Target:  5'- cGcGGACG-GGCCCG-AGGUUCcGCCg -3'
miRNA:   3'- aC-CUUGCuCCGGGCgUUCGAGuUGGg -5'
5185 5' -56.3 NC_001798.1 + 28628 0.66 0.902527
Target:  5'- gGGggUccuGGGCgCGCGAGCgggcCGACCg -3'
miRNA:   3'- aCCuuGc--UCCGgGCGUUCGa---GUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.