miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5185 5' -56.3 NC_001798.1 + 100134 1.11 0.002074
Target:  5'- cUGGAACGAGGCCCGCAAGCUCAACCCc -3'
miRNA:   3'- -ACCUUGCUCCGGGCGUUCGAGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 69522 0.85 0.115573
Target:  5'- cGGGGCGuGGCCCGCGAGCUC-GCgCg -3'
miRNA:   3'- aCCUUGCuCCGGGCGUUCGAGuUGgG- -5'
5185 5' -56.3 NC_001798.1 + 34729 0.81 0.19747
Target:  5'- aGGGGCGAgggucgGGCCCGgGAGCggggCGGCCCg -3'
miRNA:   3'- aCCUUGCU------CCGGGCgUUCGa---GUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 152247 0.8 0.207484
Target:  5'- cGGGGcCGGGGUCCGCccggGAGCUCGugCCg -3'
miRNA:   3'- aCCUU-GCUCCGGGCG----UUCGAGUugGG- -5'
5185 5' -56.3 NC_001798.1 + 51544 0.8 0.207484
Target:  5'- gUGGGACGAG-UCCGUgcGCUCGGCCCu -3'
miRNA:   3'- -ACCUUGCUCcGGGCGuuCGAGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 4101 0.79 0.246038
Target:  5'- cGGGGCGGgcucGGCCCuggGCGGGCUCGGCCg -3'
miRNA:   3'- aCCUUGCU----CCGGG---CGUUCGAGUUGGg -5'
5185 5' -56.3 NC_001798.1 + 28711 0.79 0.27063
Target:  5'- cUGGAGCccGAGGCCCG--AGCUCgGGCCCg -3'
miRNA:   3'- -ACCUUG--CUCCGGGCguUCGAG-UUGGG- -5'
5185 5' -56.3 NC_001798.1 + 61854 0.78 0.297163
Target:  5'- gGGAACGcGGgCCGCcGGCcCAGCCCg -3'
miRNA:   3'- aCCUUGCuCCgGGCGuUCGaGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 42497 0.77 0.318358
Target:  5'- cGGGGCGGGGaCCgGUAGGCacacgcgCAGCCCg -3'
miRNA:   3'- aCCUUGCUCC-GGgCGUUCGa------GUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 2346 0.77 0.325671
Target:  5'- gGGAagaGCGGguGGUCCGUGAGCUCGGCCa -3'
miRNA:   3'- aCCU---UGCU--CCGGGCGUUCGAGUUGGg -5'
5185 5' -56.3 NC_001798.1 + 22355 0.77 0.333108
Target:  5'- cGGGGCGGGGCCgCGCAuaaugcGGUUCcACCUg -3'
miRNA:   3'- aCCUUGCUCCGG-GCGU------UCGAGuUGGG- -5'
5185 5' -56.3 NC_001798.1 + 14997 0.77 0.348353
Target:  5'- gGGGGCGAGGCgUGUuggGGGCgagCGGCCCa -3'
miRNA:   3'- aCCUUGCUCCGgGCG---UUCGa--GUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 102437 0.77 0.348353
Target:  5'- gGGGACuGGGGCCCGCGaacAGCau-ACCCg -3'
miRNA:   3'- aCCUUG-CUCCGGGCGU---UCGaguUGGG- -5'
5185 5' -56.3 NC_001798.1 + 107075 0.76 0.356161
Target:  5'- gGGGAgGcuguGGGCCCGCAAGCcCcGCCCc -3'
miRNA:   3'- aCCUUgC----UCCGGGCGUUCGaGuUGGG- -5'
5185 5' -56.3 NC_001798.1 + 75429 0.76 0.372141
Target:  5'- cGaGAACGGGGCCCGCAcGCauacgCAGgCCg -3'
miRNA:   3'- aC-CUUGCUCCGGGCGUuCGa----GUUgGG- -5'
5185 5' -56.3 NC_001798.1 + 14359 0.76 0.380312
Target:  5'- cGGAcGCGGGGCCgGUggGUgCGGCCCc -3'
miRNA:   3'- aCCU-UGCUCCGGgCGuuCGaGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 121554 0.76 0.39701
Target:  5'- cUGGcgUGGGGCCCGUggGCgaccuguGCCCg -3'
miRNA:   3'- -ACCuuGCUCCGGGCGuuCGagu----UGGG- -5'
5185 5' -56.3 NC_001798.1 + 58083 0.76 0.39701
Target:  5'- cGGAGaaaaaGAGGcCCCGCAGGgUCGcggccGCCCa -3'
miRNA:   3'- aCCUUg----CUCC-GGGCGUUCgAGU-----UGGG- -5'
5185 5' -56.3 NC_001798.1 + 2096 0.75 0.405534
Target:  5'- cGGGG-GGGGCCCGCccccGGCgCGGCCCg -3'
miRNA:   3'- aCCUUgCUCCGGGCGu---UCGaGUUGGG- -5'
5185 5' -56.3 NC_001798.1 + 109562 0.75 0.414173
Target:  5'- aUGGcGCGGuGGCCC-CGAGCgCGGCCCg -3'
miRNA:   3'- -ACCuUGCU-CCGGGcGUUCGaGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.