miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5187 3' -58.4 NC_001798.1 + 150365 0.66 0.834368
Target:  5'- cCACCG-GCACGgcgggcggcgcgggcCCGGCcGCGuCCGCg -3'
miRNA:   3'- uGUGGCuCGUGU---------------GGUCGaUGC-GGCGg -5'
5187 3' -58.4 NC_001798.1 + 22267 0.66 0.831091
Target:  5'- cGCGCCGGGCGCuaAUgAG--AUGCCGCg -3'
miRNA:   3'- -UGUGGCUCGUG--UGgUCgaUGCGGCGg -5'
5187 3' -58.4 NC_001798.1 + 31702 0.66 0.831091
Target:  5'- cGCACCGcGCGCcCCGGUcGCGCaUGaCCc -3'
miRNA:   3'- -UGUGGCuCGUGuGGUCGaUGCG-GC-GG- -5'
5187 3' -58.4 NC_001798.1 + 52979 0.66 0.831091
Target:  5'- cGCgACCGGGCugGgCGGCc-CGCCacGCCc -3'
miRNA:   3'- -UG-UGGCUCGugUgGUCGauGCGG--CGG- -5'
5187 3' -58.4 NC_001798.1 + 105929 0.66 0.831091
Target:  5'- cCACCG-GCACGCaaaaaaGCGCCGCg -3'
miRNA:   3'- uGUGGCuCGUGUGgucga-UGCGGCGg -5'
5187 3' -58.4 NC_001798.1 + 141718 0.66 0.831091
Target:  5'- cCACgGAGCugGCCAugGCcaucaACGCCGaCUa -3'
miRNA:   3'- uGUGgCUCGugUGGU--CGa----UGCGGC-GG- -5'
5187 3' -58.4 NC_001798.1 + 14818 0.66 0.831091
Target:  5'- cCGCCcGGcCGCGCCaaAGUUGUGCUGCCa -3'
miRNA:   3'- uGUGGcUC-GUGUGG--UCGAUGCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 21841 0.66 0.831091
Target:  5'- gGCcCCGGGCaggGCGCCAGUgcuCGCacuuuGCCc -3'
miRNA:   3'- -UGuGGCUCG---UGUGGUCGau-GCGg----CGG- -5'
5187 3' -58.4 NC_001798.1 + 31608 0.66 0.831091
Target:  5'- cGCGuCCgGAGUcCGCCccGCgcCGCCGCCg -3'
miRNA:   3'- -UGU-GG-CUCGuGUGGu-CGauGCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 74407 0.66 0.831091
Target:  5'- gGCGCCG-GCGgACCuGac-CGCCGCg -3'
miRNA:   3'- -UGUGGCuCGUgUGGuCgauGCGGCGg -5'
5187 3' -58.4 NC_001798.1 + 101805 0.66 0.831091
Target:  5'- cGCGCCGGGCGC-CUcggguugggguaAGCU-CGCgGCg -3'
miRNA:   3'- -UGUGGCUCGUGuGG------------UCGAuGCGgCGg -5'
5187 3' -58.4 NC_001798.1 + 141578 0.66 0.831091
Target:  5'- aGCugCGgcggcGGCACGCgaCGGCcgGCGUgGCCg -3'
miRNA:   3'- -UGugGC-----UCGUGUG--GUCGa-UGCGgCGG- -5'
5187 3' -58.4 NC_001798.1 + 145717 0.66 0.831091
Target:  5'- cCAgCGAGCcccgGCcCCGGCccgcgcccCGCCGCCa -3'
miRNA:   3'- uGUgGCUCG----UGuGGUCGau------GCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 145509 0.66 0.822778
Target:  5'- cCGCCGcGCGCcCCcGCccgGCCGCCg -3'
miRNA:   3'- uGUGGCuCGUGuGGuCGaugCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 145467 0.66 0.822778
Target:  5'- cCGCCGcGCGCcCCcGCccgGCCGCCg -3'
miRNA:   3'- uGUGGCuCGUGuGGuCGaugCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 145425 0.66 0.822778
Target:  5'- cCGCCGcGCGCcCCcGCccgGCCGCCg -3'
miRNA:   3'- uGUGGCuCGUGuGGuCGaugCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 131001 0.66 0.822778
Target:  5'- gGCAUCGc-CAUACgGGC--CGCCGCCa -3'
miRNA:   3'- -UGUGGCucGUGUGgUCGauGCGGCGG- -5'
5187 3' -58.4 NC_001798.1 + 93938 0.66 0.822778
Target:  5'- cCACCGAGCGCgucaugGCCgAGCU-CGagGCCc -3'
miRNA:   3'- uGUGGCUCGUG------UGG-UCGAuGCggCGG- -5'
5187 3' -58.4 NC_001798.1 + 89664 0.66 0.822778
Target:  5'- uCGCCGAuCACcCCGcGCUGCGCgGgCCc -3'
miRNA:   3'- uGUGGCUcGUGuGGU-CGAUGCGgC-GG- -5'
5187 3' -58.4 NC_001798.1 + 76959 0.66 0.822778
Target:  5'- cGCugCGGGCGgACCuGUggGgGCUGCUg -3'
miRNA:   3'- -UGugGCUCGUgUGGuCGa-UgCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.