miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5187 5' -54.3 NC_001798.1 + 69518 0.66 0.959837
Target:  5'- gGAGCGGGgCGugGcccGCgagCU-CGCGCg -3'
miRNA:   3'- gUUCGUCCaGCugC---CGaa-GAuGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 39590 0.66 0.959837
Target:  5'- -uGGCGacccccuuGGUUGugGGCguuUCUggagACGCGCc -3'
miRNA:   3'- guUCGU--------CCAGCugCCGa--AGA----UGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 43838 0.66 0.959837
Target:  5'- --cGUAcGUCGGCGGCga-UGCgGCGCu -3'
miRNA:   3'- guuCGUcCAGCUGCCGaagAUG-CGCG- -5'
5187 5' -54.3 NC_001798.1 + 108856 0.66 0.957623
Target:  5'- aCGGGCGGGcuggcguucgggugCGACGccgcGCUcgUGCGCGCg -3'
miRNA:   3'- -GUUCGUCCa-------------GCUGC----CGAagAUGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 143314 0.66 0.956101
Target:  5'- -cGGCGGGUCGcCGGCcacgCUcgACGUaaGCg -3'
miRNA:   3'- guUCGUCCAGCuGCCGaa--GA--UGCG--CG- -5'
5187 5' -54.3 NC_001798.1 + 20874 0.66 0.956101
Target:  5'- aCGAGCugGGGagGACGGggcgUCUGCGCu- -3'
miRNA:   3'- -GUUCG--UCCagCUGCCga--AGAUGCGcg -5'
5187 5' -54.3 NC_001798.1 + 149182 0.66 0.956101
Target:  5'- -cGGUGGGg-GGCGGCUUCcuuCGgGCa -3'
miRNA:   3'- guUCGUCCagCUGCCGAAGau-GCgCG- -5'
5187 5' -54.3 NC_001798.1 + 2269 0.66 0.956101
Target:  5'- gGGGCGGG---GCGGCgca-GCGCGCg -3'
miRNA:   3'- gUUCGUCCagcUGCCGaagaUGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 52241 0.66 0.947937
Target:  5'- --cGguGGUCGugGGg----GCGCGCc -3'
miRNA:   3'- guuCguCCAGCugCCgaagaUGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 43518 0.66 0.947937
Target:  5'- gCAGGUAGG-CGGCGGCcgcgUCUcC-CGCc -3'
miRNA:   3'- -GUUCGUCCaGCUGCCGa---AGAuGcGCG- -5'
5187 5' -54.3 NC_001798.1 + 75883 0.66 0.947937
Target:  5'- --uGCGGGUCGA-GGCggaggcccgCgagAUGCGCg -3'
miRNA:   3'- guuCGUCCAGCUgCCGaa-------Ga--UGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 103029 0.66 0.947937
Target:  5'- gCGAGCucGGccUCGGCGGCcUC-GCGuCGCa -3'
miRNA:   3'- -GUUCGu-CC--AGCUGCCGaAGaUGC-GCG- -5'
5187 5' -54.3 NC_001798.1 + 117679 0.66 0.943502
Target:  5'- --cGCGcGGcCGGCGGCgUgUACGCGg -3'
miRNA:   3'- guuCGU-CCaGCUGCCGaAgAUGCGCg -5'
5187 5' -54.3 NC_001798.1 + 57406 0.66 0.943502
Target:  5'- -cAGCGGGUCGugGCGGUUgcaUCgcACGgGCu -3'
miRNA:   3'- guUCGUCCAGC--UGCCGA---AGa-UGCgCG- -5'
5187 5' -54.3 NC_001798.1 + 12345 0.66 0.943502
Target:  5'- -cGGaCGGGUCGAggUGGCUg-UGgGCGCg -3'
miRNA:   3'- guUC-GUCCAGCU--GCCGAagAUgCGCG- -5'
5187 5' -54.3 NC_001798.1 + 103309 0.66 0.943502
Target:  5'- -uAGCGGcGcUGGCGGCcgUCUcgaggACGCGCu -3'
miRNA:   3'- guUCGUC-CaGCUGCCGa-AGA-----UGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 3320 0.66 0.943502
Target:  5'- gGGGCGGcGgcggCGGCgGGCUUCccGCGgGCg -3'
miRNA:   3'- gUUCGUC-Ca---GCUG-CCGAAGa-UGCgCG- -5'
5187 5' -54.3 NC_001798.1 + 86974 0.67 0.938827
Target:  5'- aCGAGCGccGUCGcuaccGCGGCUUCUuCGcCGCc -3'
miRNA:   3'- -GUUCGUc-CAGC-----UGCCGAAGAuGC-GCG- -5'
5187 5' -54.3 NC_001798.1 + 75936 0.67 0.938827
Target:  5'- --cGCgGGGUCGAcuCGGUcUCgcaGCGCGCc -3'
miRNA:   3'- guuCG-UCCAGCU--GCCGaAGa--UGCGCG- -5'
5187 5' -54.3 NC_001798.1 + 68987 0.67 0.938827
Target:  5'- --uGUGGGcccggaccgccUCGGCGGCgUC-GCGCGCa -3'
miRNA:   3'- guuCGUCC-----------AGCUGCCGaAGaUGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.