miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 15134 0.66 0.485502
Target:  5'- uCGGGGgGuuCgCCG-UCCCCGGCGCCc -3'
miRNA:   3'- -GCUCCgCugG-GGCgGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 26456 0.66 0.485502
Target:  5'- gGAcGCGGgCCCGCCCCCgcaGAuaCGCUg -3'
miRNA:   3'- gCUcCGCUgGGGCGGGGGg--CU--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 61696 0.66 0.485502
Target:  5'- -aAGGCGAUCCUGgCCCgCaCGACgGCCc -3'
miRNA:   3'- gcUCCGCUGGGGCgGGG-G-GCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 91314 0.66 0.485502
Target:  5'- gGGGGCaaaaaACCCagaCGCCgCCCGAgcCGCCGg -3'
miRNA:   3'- gCUCCGc----UGGG---GCGGgGGGCU--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 115318 0.66 0.485502
Target:  5'- cCGGGGaccugGugCCCGCCCCCg---GCCAc -3'
miRNA:   3'- -GCUCCg----CugGGGCGGGGGgcugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 7634 0.66 0.485502
Target:  5'- gCGcGGacCGGCCCCcggaGUCCCCCGGCuCCGa -3'
miRNA:   3'- -GCuCC--GCUGGGG----CGGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 61464 0.66 0.484625
Target:  5'- cCGGGGCcuccgGGCCCCGgagggcuacuuuaCCCCCau-CGCCGu -3'
miRNA:   3'- -GCUCCG-----CUGGGGC-------------GGGGGgcuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 67114 0.66 0.468106
Target:  5'- ---cGCGGCCCCGacgucCUUCUCGGCGCCGc -3'
miRNA:   3'- gcucCGCUGGGGC-----GGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 97136 0.66 0.468106
Target:  5'- --cGGCGAUCgCGCCCgCCacuccaccaugGACGCCu -3'
miRNA:   3'- gcuCCGCUGGgGCGGGgGG-----------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 97061 0.66 0.47156
Target:  5'- gGAGGCGcaugacguguuucagGCCacuaCGCCCggCCUGuACGCCAu -3'
miRNA:   3'- gCUCCGC---------------UGGg---GCGGG--GGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 58656 0.66 0.475895
Target:  5'- --cGGCGGCgguugucccgaggCCCGCCaCCaCCGcCGCCGu -3'
miRNA:   3'- gcuCCGCUG-------------GGGCGG-GG-GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25711 0.66 0.476765
Target:  5'- -uGGGCGGgcaacuggaCCgGCgCCCCCGACGUCu -3'
miRNA:   3'- gcUCCGCUg--------GGgCG-GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 51105 0.66 0.476765
Target:  5'- aGAuGGCGAgCgaagagCCGCCCCCgCGccguCGCCGg -3'
miRNA:   3'- gCU-CCGCUgG------GGCGGGGG-GCu---GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 136828 0.66 0.476765
Target:  5'- gCGuGGCGGgCCaCGaCCCCCaaccACGCCGa -3'
miRNA:   3'- -GCuCCGCUgGG-GC-GGGGGgc--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 27962 0.66 0.476765
Target:  5'- --cGGCGcuccaGCCgugCCGCgCCCCGGCGCUc -3'
miRNA:   3'- gcuCCGC-----UGG---GGCGgGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 84111 0.66 0.476765
Target:  5'- -cGGGCGuCCaggccgaggCGCCCCuuGACGUCGu -3'
miRNA:   3'- gcUCCGCuGGg--------GCGGGGggCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 128764 0.66 0.476765
Target:  5'- --uGGC--CCCCGCCCCCCaGACcCCc -3'
miRNA:   3'- gcuCCGcuGGGGCGGGGGG-CUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 154098 0.66 0.48025
Target:  5'- cCGGGGCgcggccggcgccgggGACCCCGgCggcggggaCCCCGGCGgCGg -3'
miRNA:   3'- -GCUCCG---------------CUGGGGCgG--------GGGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 23857 0.66 0.484625
Target:  5'- -uGGGCGACagCCGCCCCggCCucuggggGGCGCCc -3'
miRNA:   3'- gcUCCGCUGg-GGCGGGG--GG-------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 92928 0.66 0.484625
Target:  5'- uCGAGGCGgucgucgGgCCCGCCg-CCGugGCCc -3'
miRNA:   3'- -GCUCCGC-------UgGGGCGGggGGCugCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.