Results 61 - 80 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 58656 | 0.66 | 0.475895 |
Target: 5'- --cGGCGGCgguugucccgaggCCCGCCaCCaCCGcCGCCGu -3' miRNA: 3'- gcuCCGCUG-------------GGGCGG-GG-GGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 154098 | 0.66 | 0.48025 |
Target: 5'- cCGGGGCgcggccggcgccgggGACCCCGgCggcggggaCCCCGGCGgCGg -3' miRNA: 3'- -GCUCCG---------------CUGGGGCgG--------GGGGCUGCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 128764 | 0.66 | 0.476765 |
Target: 5'- --uGGC--CCCCGCCCCCCaGACcCCc -3' miRNA: 3'- gcuCCGcuGGGGCGGGGGG-CUGcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 84111 | 0.66 | 0.476765 |
Target: 5'- -cGGGCGuCCaggccgaggCGCCCCuuGACGUCGu -3' miRNA: 3'- gcUCCGCuGGg--------GCGGGGggCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 27962 | 0.66 | 0.476765 |
Target: 5'- --cGGCGcuccaGCCgugCCGCgCCCCGGCGCUc -3' miRNA: 3'- gcuCCGC-----UGG---GGCGgGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 136828 | 0.66 | 0.476765 |
Target: 5'- gCGuGGCGGgCCaCGaCCCCCaaccACGCCGa -3' miRNA: 3'- -GCuCCGCUgGG-GC-GGGGGgc--UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 51105 | 0.66 | 0.476765 |
Target: 5'- aGAuGGCGAgCgaagagCCGCCCCCgCGccguCGCCGg -3' miRNA: 3'- gCU-CCGCUgG------GGCGGGGG-GCu---GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 25711 | 0.66 | 0.476765 |
Target: 5'- -uGGGCGGgcaacuggaCCgGCgCCCCCGACGUCu -3' miRNA: 3'- gcUCCGCUg--------GGgCG-GGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 139292 | 0.67 | 0.417955 |
Target: 5'- gGGGGCGcauagcGCCgcgucgCCGCCCCgcguccgcaucgCCGGCGCCc -3' miRNA: 3'- gCUCCGC------UGG------GGCGGGG------------GGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 30568 | 0.67 | 0.417955 |
Target: 5'- aCGAGaucGCCCCGCCCCUgCGcUGCCAg -3' miRNA: 3'- -GCUCcgcUGGGGCGGGGG-GCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 46409 | 0.67 | 0.417955 |
Target: 5'- --cGGCagGGCCaCCGcCCCCCCGGCgGUCGc -3' miRNA: 3'- gcuCCG--CUGG-GGC-GGGGGGCUG-CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 83872 | 0.67 | 0.417955 |
Target: 5'- cCGAGGCGGcgacCCCCGgC-CCgGGCGCUc -3' miRNA: 3'- -GCUCCGCU----GGGGCgGgGGgCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 127130 | 0.67 | 0.417955 |
Target: 5'- gGGGGUuuggGAUgCCCGCCgCCCUGACcacgGCCAa -3' miRNA: 3'- gCUCCG----CUG-GGGCGG-GGGGCUG----CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 147191 | 0.67 | 0.417955 |
Target: 5'- -aAGGCGucCCCCGCCCggcggUCCGGC-CCGg -3' miRNA: 3'- gcUCCGCu-GGGGCGGG-----GGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 59687 | 0.67 | 0.42527 |
Target: 5'- gGGGGCGGCgggcacgCCCGUCUUCgGGCGCUu -3' miRNA: 3'- gCUCCGCUG-------GGGCGGGGGgCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 150808 | 0.67 | 0.42527 |
Target: 5'- aCGGGGCG-CCgCCGCUgcugcugCUCCGcgggGCGCCAg -3' miRNA: 3'- -GCUCCGCuGG-GGCGG-------GGGGC----UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 96889 | 0.67 | 0.426088 |
Target: 5'- aCGAGcuGCGACgguaCCUGCCCCaCGcCGCCGg -3' miRNA: 3'- -GCUC--CGCUG----GGGCGGGGgGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 129032 | 0.67 | 0.426088 |
Target: 5'- -aAGGCGauGCUCCGCCCCggauCgGGCGCUg -3' miRNA: 3'- gcUCCGC--UGGGGCGGGG----GgCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 25130 | 0.67 | 0.426088 |
Target: 5'- gCGcGGaCGccCCCCGCCCCgCGGcCGCCc -3' miRNA: 3'- -GCuCC-GCu-GGGGCGGGGgGCU-GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 85713 | 0.67 | 0.417955 |
Target: 5'- -cAGGcCGACgCCC-UCCCCgGGCGCCGc -3' miRNA: 3'- gcUCC-GCUG-GGGcGGGGGgCUGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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