miRNA display CGI


Results 81 - 100 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 145391 0.67 0.401978
Target:  5'- aGGGGCGACgCggggaaagcgCGCCCccgCCCGGcCGCCGc -3'
miRNA:   3'- gCUCCGCUGgG----------GCGGG---GGGCU-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29024 0.67 0.401978
Target:  5'- -cGGGCccgGACUCCGCCCCggcgaCCGccccGCGCCGg -3'
miRNA:   3'- gcUCCG---CUGGGGCGGGG-----GGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 5288 0.67 0.401978
Target:  5'- gGAGGagcgauCGACgCCGCCgcgCCCCGGCucGCCGg -3'
miRNA:   3'- gCUCC------GCUGgGGCGG---GGGGCUG--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 81230 0.67 0.409918
Target:  5'- aCGAGGCaGGuCCCUcUgCCCCGACcGCCGc -3'
miRNA:   3'- -GCUCCG-CU-GGGGcGgGGGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 127789 0.67 0.409918
Target:  5'- ---cGCGACCCCgauaGUCCCCCGAagcgGCCc -3'
miRNA:   3'- gcucCGCUGGGG----CGGGGGGCUg---CGGu -5'
5188 5' -66.8 NC_001798.1 + 152051 0.67 0.417147
Target:  5'- gGGGGCGgcgcacgGCCCacggggGUCCCCCGAcCGCUu -3'
miRNA:   3'- gCUCCGC-------UGGGg-----CGGGGGGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 25130 0.67 0.426088
Target:  5'- gCGcGGaCGccCCCCGCCCCgCGGcCGCCc -3'
miRNA:   3'- -GCuCC-GCu-GGGGCGGGGgGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 129032 0.67 0.426088
Target:  5'- -aAGGCGauGCUCCGCCCCggauCgGGCGCUg -3'
miRNA:   3'- gcUCCGC--UGGGGCGGGG----GgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 96889 0.67 0.426088
Target:  5'- aCGAGcuGCGACgguaCCUGCCCCaCGcCGCCGg -3'
miRNA:   3'- -GCUC--CGCUG----GGGCGGGGgGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150808 0.67 0.42527
Target:  5'- aCGGGGCG-CCgCCGCUgcugcugCUCCGcgggGCGCCAg -3'
miRNA:   3'- -GCUCCGCuGG-GGCGG-------GGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 59687 0.67 0.42527
Target:  5'- gGGGGCGGCgggcacgCCCGUCUUCgGGCGCUu -3'
miRNA:   3'- gCUCCGCUG-------GGGCGGGGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 147191 0.67 0.417955
Target:  5'- -aAGGCGucCCCCGCCCggcggUCCGGC-CCGg -3'
miRNA:   3'- gcUCCGCu-GGGGCGGG-----GGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 127130 0.67 0.417955
Target:  5'- gGGGGUuuggGAUgCCCGCCgCCCUGACcacgGCCAa -3'
miRNA:   3'- gCUCCG----CUG-GGGCGG-GGGGCUG----CGGU- -5'
5188 5' -66.8 NC_001798.1 + 83872 0.67 0.417955
Target:  5'- cCGAGGCGGcgacCCCCGgC-CCgGGCGCUc -3'
miRNA:   3'- -GCUCCGCU----GGGGCgGgGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 46409 0.67 0.417955
Target:  5'- --cGGCagGGCCaCCGcCCCCCCGGCgGUCGc -3'
miRNA:   3'- gcuCCG--CUGG-GGC-GGGGGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 30568 0.67 0.417955
Target:  5'- aCGAGaucGCCCCGCCCCUgCGcUGCCAg -3'
miRNA:   3'- -GCUCcgcUGGGGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 139292 0.67 0.417955
Target:  5'- gGGGGCGcauagcGCCgcgucgCCGCCCCgcguccgcaucgCCGGCGCCc -3'
miRNA:   3'- gCUCCGC------UGG------GGCGGGG------------GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 85713 0.67 0.417955
Target:  5'- -cAGGcCGACgCCC-UCCCCgGGCGCCGc -3'
miRNA:   3'- gcUCC-GCUG-GGGcGGGGGgCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 81601 0.67 0.417955
Target:  5'- aCGGGGCGcguGCCCgugGCCCCUcgCGACGaCCc -3'
miRNA:   3'- -GCUCCGC---UGGGg--CGGGGG--GCUGC-GGu -5'
5188 5' -66.8 NC_001798.1 + 79966 0.67 0.417147
Target:  5'- aGcGGCGGCgCCGCguccgccgccgggCCCCCGggggucccaGCGCCAc -3'
miRNA:   3'- gCuCCGCUGgGGCG-------------GGGGGC---------UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.