miRNA display CGI


Results 121 - 140 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 124280 0.68 0.363778
Target:  5'- -cAGGCGA-CCCGCCgCCCG-CGCa- -3'
miRNA:   3'- gcUCCGCUgGGGCGGgGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 51185 0.68 0.363778
Target:  5'- -cGGGCGGCggCGCCCCCC--CGCCGg -3'
miRNA:   3'- gcUCCGCUGggGCGGGGGGcuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 1252 0.68 0.363778
Target:  5'- gGGGGCGGgCCCGCgUCCgCGuCGUCGc -3'
miRNA:   3'- gCUCCGCUgGGGCGgGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 61879 0.68 0.363041
Target:  5'- --cGGCGGCCCCcucgggcGCgCCCUCGAaGCCGg -3'
miRNA:   3'- gcuCCGCUGGGG-------CG-GGGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 93197 0.68 0.356446
Target:  5'- uCGAuGGCGGuCUuugacgagCCGCCCCCCGACaucaCCAc -3'
miRNA:   3'- -GCU-CCGCU-GG--------GGCGGGGGGCUGc---GGU- -5'
5188 5' -66.8 NC_001798.1 + 31822 0.68 0.356446
Target:  5'- cCGGGGUc-CCCCGCggcaccaacaCCCCCGGUGCCGc -3'
miRNA:   3'- -GCUCCGcuGGGGCG----------GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 138344 0.68 0.356446
Target:  5'- gCGAGGCGGCCgagCCGgCCUUCGucuCGUCAu -3'
miRNA:   3'- -GCUCCGCUGG---GGCgGGGGGCu--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 95027 0.68 0.356446
Target:  5'- gGAGGCcggGGCCCgCGCgcugauggacuCCCUCGACGCgCAc -3'
miRNA:   3'- gCUCCG---CUGGG-GCG-----------GGGGGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 23056 0.68 0.356446
Target:  5'- aCGAGGCcguucgcacGAUCCCGucgccCCCCCCGgaGCGCg- -3'
miRNA:   3'- -GCUCCG---------CUGGGGC-----GGGGGGC--UGCGgu -5'
5188 5' -66.8 NC_001798.1 + 23717 0.68 0.36674
Target:  5'- -cGGGCGGCCCCggcgggucgaGCuggacgccgacgcggCCUCCGGCGCCu -3'
miRNA:   3'- gcUCCGCUGGGG----------CG---------------GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 24360 0.68 0.36674
Target:  5'- aCGAcGGCGACgacgcccgcgggaagCCCGCCgCCgCCGcCGCCc -3'
miRNA:   3'- -GCU-CCGCUG---------------GGGCGG-GG-GGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 30822 0.68 0.371214
Target:  5'- cCGcGGaCGGCCCCGCgCuCCCUGuCGCUg -3'
miRNA:   3'- -GCuCC-GCUGGGGCG-G-GGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 23579 0.68 0.371214
Target:  5'- gGGGGCGGCgccccggccgagCCCGCCCagggCCGAgccCGCCc -3'
miRNA:   3'- gCUCCGCUG------------GGGCGGGg---GGCU---GCGGu -5'
5188 5' -66.8 NC_001798.1 + 3229 0.68 0.371214
Target:  5'- -cAGGCG-CCCCagggcggcgaGCaCCCCCGcgGCGCCGu -3'
miRNA:   3'- gcUCCGCuGGGG----------CG-GGGGGC--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 153050 0.68 0.371214
Target:  5'- gCGGuuGGcCGGCgCCGCCCCCUGGgGCgGg -3'
miRNA:   3'- -GCU--CC-GCUGgGGCGGGGGGCUgCGgU- -5'
5188 5' -66.8 NC_001798.1 + 118068 0.68 0.371214
Target:  5'- ---aGCGACCCCGCCCUgcuaCGcaGCGCCc -3'
miRNA:   3'- gcucCGCUGGGGCGGGGg---GC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 92056 0.68 0.371214
Target:  5'- gCGGGuGUaGACCCCaCCCCCa-GCGCCGg -3'
miRNA:   3'- -GCUC-CG-CUGGGGcGGGGGgcUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 3900 0.68 0.371214
Target:  5'- gGGGGcCGGCCCCGggccacggcuCCCCgCUGACGUa- -3'
miRNA:   3'- gCUCC-GCUGGGGC----------GGGG-GGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 52802 0.68 0.370466
Target:  5'- gGAcGGCaGACCCCGCCUuccugcucgaagaCCUGGCgGCCu -3'
miRNA:   3'- gCU-CCG-CUGGGGCGGG-------------GGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 16635 0.68 0.356446
Target:  5'- cCGGGGCaGGUCuuGCCgCCCGGCGuCCGc -3'
miRNA:   3'- -GCUCCG-CUGGggCGGgGGGCUGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.