Results 141 - 160 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 81446 | 0.68 | 0.371214 |
Target: 5'- aCGAcgccGGCGGCCCCacGCCCaauCCGGCcCCGg -3' miRNA: 3'- -GCU----CCGCUGGGG--CGGGg--GGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 30822 | 0.68 | 0.371214 |
Target: 5'- cCGcGGaCGGCCCCGCgCuCCCUGuCGCUg -3' miRNA: 3'- -GCuCC-GCUGGGGCG-G-GGGGCuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23579 | 0.68 | 0.371214 |
Target: 5'- gGGGGCGGCgccccggccgagCCCGCCCagggCCGAgccCGCCc -3' miRNA: 3'- gCUCCGCUG------------GGGCGGGg---GGCU---GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 3229 | 0.68 | 0.371214 |
Target: 5'- -cAGGCG-CCCCagggcggcgaGCaCCCCCGcgGCGCCGu -3' miRNA: 3'- gcUCCGCuGGGG----------CG-GGGGGC--UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 153050 | 0.68 | 0.371214 |
Target: 5'- gCGGuuGGcCGGCgCCGCCCCCUGGgGCgGg -3' miRNA: 3'- -GCU--CC-GCUGgGGCGGGGGGCUgCGgU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 118068 | 0.68 | 0.371214 |
Target: 5'- ---aGCGACCCCGCCCUgcuaCGcaGCGCCc -3' miRNA: 3'- gcucCGCUGGGGCGGGGg---GC--UGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 92056 | 0.68 | 0.371214 |
Target: 5'- gCGGGuGUaGACCCCaCCCCCa-GCGCCGg -3' miRNA: 3'- -GCUC-CG-CUGGGGcGGGGGgcUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 3900 | 0.68 | 0.371214 |
Target: 5'- gGGGGcCGGCCCCGggccacggcuCCCCgCUGACGUa- -3' miRNA: 3'- gCUCC-GCUGGGGC----------GGGG-GGCUGCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 52802 | 0.68 | 0.370466 |
Target: 5'- gGAcGGCaGACCCCGCCUuccugcucgaagaCCUGGCgGCCu -3' miRNA: 3'- gCU-CCG-CUGGGGCGGG-------------GGGCUG-CGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 24360 | 0.68 | 0.36674 |
Target: 5'- aCGAcGGCGACgacgcccgcgggaagCCCGCCgCCgCCGcCGCCc -3' miRNA: 3'- -GCU-CCGCUG---------------GGGCGG-GG-GGCuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 31822 | 0.68 | 0.356446 |
Target: 5'- cCGGGGUc-CCCCGCggcaccaacaCCCCCGGUGCCGc -3' miRNA: 3'- -GCUCCGcuGGGGCG----------GGGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 93197 | 0.68 | 0.356446 |
Target: 5'- uCGAuGGCGGuCUuugacgagCCGCCCCCCGACaucaCCAc -3' miRNA: 3'- -GCU-CCGCU-GG--------GGCGGGGGGCUGc---GGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 61879 | 0.68 | 0.363041 |
Target: 5'- --cGGCGGCCCCcucgggcGCgCCCUCGAaGCCGg -3' miRNA: 3'- gcuCCGCUGGGG-------CG-GGGGGCUgCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 1252 | 0.68 | 0.363778 |
Target: 5'- gGGGGCGGgCCCGCgUCCgCGuCGUCGc -3' miRNA: 3'- gCUCCGCUgGGGCGgGGG-GCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 51185 | 0.68 | 0.363778 |
Target: 5'- -cGGGCGGCggCGCCCCCC--CGCCGg -3' miRNA: 3'- gcUCCGCUGggGCGGGGGGcuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 124280 | 0.68 | 0.363778 |
Target: 5'- -cAGGCGA-CCCGCCgCCCG-CGCa- -3' miRNA: 3'- gcUCCGCUgGGGCGGgGGGCuGCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23717 | 0.68 | 0.36674 |
Target: 5'- -cGGGCGGCCCCggcgggucgaGCuggacgccgacgcggCCUCCGGCGCCu -3' miRNA: 3'- gcUCCGCUGGGG----------CG---------------GGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 111724 | 0.69 | 0.328168 |
Target: 5'- uGAcGGUGGcccgcuuggcCCCCGCgCCCCCGGCcCCGg -3' miRNA: 3'- gCU-CCGCU----------GGGGCG-GGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 70453 | 0.69 | 0.328168 |
Target: 5'- gCGGuGGCGcuCCCCGagaCCCCCGAgGCg- -3' miRNA: 3'- -GCU-CCGCu-GGGGCg--GGGGGCUgCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 32067 | 0.69 | 0.328168 |
Target: 5'- -cGGGCG-CCgCGCCCCCguCGGCGUCu -3' miRNA: 3'- gcUCCGCuGGgGCGGGGG--GCUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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