miRNA display CGI


Results 161 - 180 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 76375 0.69 0.314663
Target:  5'- --uGGCGGCCUgGCUCUcgguccugaCCGACGCCGc -3'
miRNA:   3'- gcuCCGCUGGGgCGGGG---------GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 44963 0.69 0.314663
Target:  5'- uCGGGccGCGGCUCCGCCCUCgGAgGCgGa -3'
miRNA:   3'- -GCUC--CGCUGGGGCGGGGGgCUgCGgU- -5'
5188 5' -66.8 NC_001798.1 + 146229 0.69 0.314663
Target:  5'- gCGAGuccCGACgCCCcCCCCCCGcCGCCc -3'
miRNA:   3'- -GCUCc--GCUG-GGGcGGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 137057 0.69 0.310694
Target:  5'- aCGucGGCuGGuCCCCGCagcgcuuaaaguaauCCUCCGACGCCAc -3'
miRNA:   3'- -GCu-CCG-CU-GGGGCG---------------GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 76014 0.69 0.30807
Target:  5'- -aGGGCcccGugCCCGCCcgcccugggCCCCGAgGCCAu -3'
miRNA:   3'- gcUCCG---CugGGGCGG---------GGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150680 0.69 0.30807
Target:  5'- --cGGCGuCUUCGCCCaCCCGcGCGCCu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG-GGGC-UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82068 0.69 0.30807
Target:  5'- --cGG-GGCCCCGCggccggcccaCCCCGGCGCCu -3'
miRNA:   3'- gcuCCgCUGGGGCGg---------GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 32028 0.69 0.30807
Target:  5'- -cGGGCGACCgcggccacgggCCGCUcgCCCCGGCGuCCGc -3'
miRNA:   3'- gcUCCGCUGG-----------GGCGG--GGGGCUGC-GGU- -5'
5188 5' -66.8 NC_001798.1 + 54519 0.69 0.321362
Target:  5'- gCGAGGaccuCCCCGagCCCCCGcACGUCGa -3'
miRNA:   3'- -GCUCCgcu-GGGGCg-GGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 78975 0.69 0.321362
Target:  5'- gGGGGCG-CCUggaaGUCCCCCGagggguuccGCGCCAu -3'
miRNA:   3'- gCUCCGCuGGGg---CGGGGGGC---------UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 111724 0.69 0.328168
Target:  5'- uGAcGGUGGcccgcuuggcCCCCGCgCCCCCGGCcCCGg -3'
miRNA:   3'- gCU-CCGCU----------GGGGCG-GGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 70453 0.69 0.328168
Target:  5'- gCGGuGGCGcuCCCCGagaCCCCCGAgGCg- -3'
miRNA:   3'- -GCU-CCGCu-GGGGCg--GGGGGCUgCGgu -5'
5188 5' -66.8 NC_001798.1 + 32067 0.69 0.328168
Target:  5'- -cGGGCG-CCgCGCCCCCguCGGCGUCu -3'
miRNA:   3'- gcUCCGCuGGgGCGGGGG--GCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 21333 0.69 0.328168
Target:  5'- --cGGCccCCCgGCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCGcuGGGgCGGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 143506 0.69 0.328168
Target:  5'- aGAGGgGACCCUcucuUCCCCC-ACGCCc -3'
miRNA:   3'- gCUCCgCUGGGGc---GGGGGGcUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 128250 0.69 0.326115
Target:  5'- gGAGGCGGCCggcaugguggaCCGCgggcucggccggcaCCUCUGGCGCCu -3'
miRNA:   3'- gCUCCGCUGG-----------GGCG--------------GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 51500 0.69 0.324072
Target:  5'- -cAGGCGGCauucccccuggaccgCCUGaCCCCCCGAguCGCCGc -3'
miRNA:   3'- gcUCCGCUG---------------GGGC-GGGGGGCU--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 47975 0.69 0.321362
Target:  5'- -cAGGCGA-CCCGCCCaggCCGAcucCGCCGu -3'
miRNA:   3'- gcUCCGCUgGGGCGGGg--GGCU---GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 14794 0.69 0.321362
Target:  5'- uCGGGuGCGcguaucgccugcGCCCCGCCCggCCG-CGCCAa -3'
miRNA:   3'- -GCUC-CGC------------UGGGGCGGGg-GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 91091 0.69 0.321362
Target:  5'- gGAGGCGGCCgUCGUggaCCCCGguGCGCUg -3'
miRNA:   3'- gCUCCGCUGG-GGCGg--GGGGC--UGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.