miRNA display CGI


Results 81 - 100 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 108247 0.71 0.226715
Target:  5'- -cGGGCGucugugguuGCCCaacaCCCCCGACGCCAg -3'
miRNA:   3'- gcUCCGC---------UGGGgcg-GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 30460 0.71 0.237117
Target:  5'- -aGGGCaGCCCCacGCCCgCCGACGCgCAg -3'
miRNA:   3'- gcUCCGcUGGGG--CGGGgGGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 96809 0.71 0.221661
Target:  5'- aGGGGCGACcaucgCCCGCCgCCUGGCGgaCCGc -3'
miRNA:   3'- gCUCCGCUG-----GGGCGGgGGGCUGC--GGU- -5'
5188 5' -66.8 NC_001798.1 + 23900 0.71 0.239244
Target:  5'- gGAGGCGcgggcccgguucgagGCCUCggGCgCCCCGGCGCCc -3'
miRNA:   3'- gCUCCGC---------------UGGGG--CGgGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 98857 0.71 0.216703
Target:  5'- ---cGUGugCCCGCCCCCgacgGGCGCCAc -3'
miRNA:   3'- gcucCGCugGGGCGGGGGg---CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 99655 0.71 0.237117
Target:  5'- --cGGCGGCUccuuCCGCuucuCCUCCGACGCCAu -3'
miRNA:   3'- gcuCCGCUGG----GGCG----GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 505 0.71 0.237117
Target:  5'- gGGGGCuucCCCCGCCCCUCcccccGCGCCc -3'
miRNA:   3'- gCUCCGcu-GGGGCGGGGGGc----UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 62407 0.71 0.233955
Target:  5'- gCGAGGacgacuacgaagaaGACCCCccccuccaGCCCCCgGACGUCGc -3'
miRNA:   3'- -GCUCCg-------------CUGGGG--------CGGGGGgCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150499 0.71 0.231867
Target:  5'- uGuGGCaGACCUCcCCCCCCGGgGCCc -3'
miRNA:   3'- gCuCCG-CUGGGGcGGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 132131 0.71 0.226715
Target:  5'- -cAGGCGGCCCUGCgCCgCCgGGgGCCGg -3'
miRNA:   3'- gcUCCGCUGGGGCG-GG-GGgCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 33184 0.71 0.241926
Target:  5'- gGGGGCGggcacgagaagccGCCCC-CaCCCCCGAgGCCu -3'
miRNA:   3'- gCUCCGC-------------UGGGGcG-GGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 145613 0.71 0.237117
Target:  5'- gCGAcccCGACCCCGCCCCaCCGcccCGCCc -3'
miRNA:   3'- -GCUcc-GCUGGGGCGGGG-GGCu--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 15622 0.71 0.231867
Target:  5'- gGAGGCGACUgCCGUuuCCUCCGGCGUa- -3'
miRNA:   3'- gCUCCGCUGG-GGCG--GGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 16190 0.71 0.242466
Target:  5'- cCGGGGgGACgcacgggCCGCCCUCCGcacGCGCCGc -3'
miRNA:   3'- -GCUCCgCUGg------GGCGGGGGGC---UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 21076 0.71 0.221661
Target:  5'- --cGG-GGCCCCGuCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCgCUGGGGC-GGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 52115 0.71 0.216703
Target:  5'- cCGGGGCucugcuCgCCCGCUucaaCCCCGGCGCCGu -3'
miRNA:   3'- -GCUCCGcu----G-GGGCGG----GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 88059 0.71 0.221661
Target:  5'- gGGGGCGGgCUCGUCCCCUGGgGCg- -3'
miRNA:   3'- gCUCCGCUgGGGCGGGGGGCUgCGgu -5'
5188 5' -66.8 NC_001798.1 + 102895 0.71 0.237117
Target:  5'- --cGGCGAUCCCgGCCUgCCGcCGCCGc -3'
miRNA:   3'- gcuCCGCUGGGG-CGGGgGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 23292 0.71 0.226715
Target:  5'- uCGccGCGACCCCcggcGCCCCgCCGACaCCAc -3'
miRNA:   3'- -GCucCGCUGGGG----CGGGG-GGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 88336 0.71 0.226715
Target:  5'- aCGAGGaCGGCCCCgaacgccugcaGUCCCUCGggcaggggucGCGCCAg -3'
miRNA:   3'- -GCUCC-GCUGGGG-----------CGGGGGGC----------UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.