Results 101 - 120 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 25612 | 0.7 | 0.259117 |
Target: 5'- gGGGGCGGgCCC-CCCCCgGAguggucCGCCGa -3' miRNA: 3'- gCUCCGCUgGGGcGGGGGgCU------GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 122511 | 0.7 | 0.264871 |
Target: 5'- uCGAGG-GACCCCuGCgCCaCCCG-CGCCc -3' miRNA: 3'- -GCUCCgCUGGGG-CG-GG-GGGCuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 56779 | 0.7 | 0.270729 |
Target: 5'- gCGGGG-GGCCCUGgCCgCCGACgGCCGc -3' miRNA: 3'- -GCUCCgCUGGGGCgGGgGGCUG-CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 116618 | 0.7 | 0.264871 |
Target: 5'- cCGAGcGaucccgugacCGACCCCGCCCaCCCGcugcauccCGCCAa -3' miRNA: 3'- -GCUC-C----------GCUGGGGCGGG-GGGCu-------GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 75979 | 0.7 | 0.270729 |
Target: 5'- uGAuGCccGugCCCGCCgCCCCGgGCGCCGg -3' miRNA: 3'- gCUcCG--CugGGGCGG-GGGGC-UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 81797 | 0.7 | 0.274293 |
Target: 5'- aGGGGUGGcguccgccggcacuCCCCGCCccggucgCCCCGuCGCCGc -3' miRNA: 3'- gCUCCGCU--------------GGGGCGG-------GGGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 9014 | 0.7 | 0.27669 |
Target: 5'- -cAGGaCGGCCCCgagacccaccGCCCCCCG-CaGCCAg -3' miRNA: 3'- gcUCC-GCUGGGG----------CGGGGGGCuG-CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 28355 | 0.7 | 0.27669 |
Target: 5'- cCGGcGGCGGCCCCccGCgUCCCCGcccgcggacGCGCCGc -3' miRNA: 3'- -GCU-CCGCUGGGG--CG-GGGGGC---------UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 72495 | 0.7 | 0.264871 |
Target: 5'- aCGAGcGCcuggGGCCCUGgCgCCCCGAgGCCAu -3' miRNA: 3'- -GCUC-CG----CUGGGGCgG-GGGGCUgCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 49869 | 0.7 | 0.264871 |
Target: 5'- cCGGGGCgccccucacGACCCCGCCCguCCUGAgGgCAa -3' miRNA: 3'- -GCUCCG---------CUGGGGCGGG--GGGCUgCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 91777 | 0.7 | 0.253465 |
Target: 5'- -aGGGCGGCCaCGCCCCCUgccgauGACGCgCGg -3' miRNA: 3'- gcUCCGCUGGgGCGGGGGG------CUGCG-GU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 22075 | 0.7 | 0.247915 |
Target: 5'- ---uGCGGCCCCGCCCCCUuuggGGCggaGCCGc -3' miRNA: 3'- gcucCGCUGGGGCGGGGGG----CUG---CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 95581 | 0.7 | 0.247915 |
Target: 5'- aCGAGGCGgagGCCCUggucaGCCagCUCGGCGCCGc -3' miRNA: 3'- -GCUCCGC---UGGGG-----CGGg-GGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 24677 | 0.7 | 0.247366 |
Target: 5'- cCGGGGCuGGCCggagcccggcccgCCGCgCCCCCG-CGCCc -3' miRNA: 3'- -GCUCCG-CUGG-------------GGCG-GGGGGCuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 102836 | 0.7 | 0.24627 |
Target: 5'- aGGGGCaGACUCCGCCCCCCauauuuuaaauuuuuCGCUc -3' miRNA: 3'- gCUCCG-CUGGGGCGGGGGGcu-------------GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 28991 | 0.7 | 0.259117 |
Target: 5'- gGGGGCGGCgCCgGCCaaCCGcGCGCCGc -3' miRNA: 3'- gCUCCGCUG-GGgCGGggGGC-UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 39659 | 0.7 | 0.259117 |
Target: 5'- cCGGGGCcguaucGACCCCGgCCCCggCGGCGaCCu -3' miRNA: 3'- -GCUCCG------CUGGGGCgGGGG--GCUGC-GGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 50220 | 0.7 | 0.264871 |
Target: 5'- gGAGGUGGauaugaCGCCCgCCGACGCCc -3' miRNA: 3'- gCUCCGCUggg---GCGGGgGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 124005 | 0.7 | 0.264871 |
Target: 5'- uGGGGUcGCUCUGUCCCCCGGgcaGCCGg -3' miRNA: 3'- gCUCCGcUGGGGCGGGGGGCUg--CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 32634 | 0.7 | 0.264871 |
Target: 5'- uGAGGCc-CCCCGaCUaCCCGACGCCc -3' miRNA: 3'- gCUCCGcuGGGGC-GGgGGGCUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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