miRNA display CGI


Results 121 - 140 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 22075 0.7 0.247915
Target:  5'- ---uGCGGCCCCGCCCCCUuuggGGCggaGCCGc -3'
miRNA:   3'- gcucCGCUGGGGCGGGGGG----CUG---CGGU- -5'
5188 5' -66.8 NC_001798.1 + 95581 0.7 0.247915
Target:  5'- aCGAGGCGgagGCCCUggucaGCCagCUCGGCGCCGc -3'
miRNA:   3'- -GCUCCGC---UGGGG-----CGGg-GGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 91777 0.7 0.253465
Target:  5'- -aGGGCGGCCaCGCCCCCUgccgauGACGCgCGg -3'
miRNA:   3'- gcUCCGCUGGgGCGGGGGG------CUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 24677 0.7 0.247366
Target:  5'- cCGGGGCuGGCCggagcccggcccgCCGCgCCCCCG-CGCCc -3'
miRNA:   3'- -GCUCCG-CUGG-------------GGCG-GGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 102836 0.7 0.24627
Target:  5'- aGGGGCaGACUCCGCCCCCCauauuuuaaauuuuuCGCUc -3'
miRNA:   3'- gCUCCG-CUGGGGCGGGGGGcu-------------GCGGu -5'
5188 5' -66.8 NC_001798.1 + 145720 0.7 0.282756
Target:  5'- gCGAGcccCGGCCCCgGCCcgcgCCCCGcCGCCAc -3'
miRNA:   3'- -GCUCc--GCUGGGG-CGG----GGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 39659 0.7 0.259117
Target:  5'- cCGGGGCcguaucGACCCCGgCCCCggCGGCGaCCu -3'
miRNA:   3'- -GCUCCG------CUGGGGCgGGGG--GCUGC-GGu -5'
5188 5' -66.8 NC_001798.1 + 96170 0.7 0.259117
Target:  5'- --uGGCGGCCgCGCCCCCgGcCGCg- -3'
miRNA:   3'- gcuCCGCUGGgGCGGGGGgCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 32634 0.7 0.264871
Target:  5'- uGAGGCc-CCCCGaCUaCCCGACGCCc -3'
miRNA:   3'- gCUCCGcuGGGGC-GGgGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 124005 0.7 0.264871
Target:  5'- uGGGGUcGCUCUGUCCCCCGGgcaGCCGg -3'
miRNA:   3'- gCUCCGcUGGGGCGGGGGGCUg--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 50220 0.7 0.264871
Target:  5'- gGAGGUGGauaugaCGCCCgCCGACGCCc -3'
miRNA:   3'- gCUCCGCUggg---GCGGGgGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 147299 0.7 0.259117
Target:  5'- -cGGGCcGCCCCGCUCCCgGGC-CCGa -3'
miRNA:   3'- gcUCCGcUGGGGCGGGGGgCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 109576 0.69 0.295202
Target:  5'- cCGAGcGCGG-CCCGCCUgaUCGACGCCc -3'
miRNA:   3'- -GCUC-CGCUgGGGCGGGg-GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 19212 0.69 0.301583
Target:  5'- uGucGUgGACCCCGUUCCCCGcaGCGCCu -3'
miRNA:   3'- gCucCG-CUGGGGCGGGGGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 34859 0.69 0.30807
Target:  5'- gCGGGG-GACgCCUuCCgCCCGGCGCCGg -3'
miRNA:   3'- -GCUCCgCUG-GGGcGGgGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25323 0.69 0.288926
Target:  5'- gGAGGCcuACUgCGCCCCgcgggCCGugGCCGa -3'
miRNA:   3'- gCUCCGc-UGGgGCGGGG-----GGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 71101 0.69 0.301583
Target:  5'- --cGGCGugCgCGCCCCCgggGACGCUg -3'
miRNA:   3'- gcuCCGCugGgGCGGGGGg--CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 120208 0.69 0.295202
Target:  5'- aGAGGagcucgGGCCCCGggccguuggcCCCCgCCGAgGCCAg -3'
miRNA:   3'- gCUCCg-----CUGGGGC----------GGGG-GGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 146594 0.69 0.295202
Target:  5'- aCGGGccgcggcgccaGCGGCCCaCGCCUCCCGcCGCa- -3'
miRNA:   3'- -GCUC-----------CGCUGGG-GCGGGGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 29798 0.69 0.288926
Target:  5'- -cGGGCgGACCCCGgCCCCgagCGGcCGCCGc -3'
miRNA:   3'- gcUCCG-CUGGGGCgGGGG---GCU-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.