miRNA display CGI


Results 141 - 160 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 137057 0.69 0.310694
Target:  5'- aCGucGGCuGGuCCCCGCagcgcuuaaaguaauCCUCCGACGCCAc -3'
miRNA:   3'- -GCu-CCG-CU-GGGGCG---------------GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 19212 0.69 0.301583
Target:  5'- uGucGUgGACCCCGUUCCCCGcaGCGCCu -3'
miRNA:   3'- gCucCG-CUGGGGCGGGGGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 78975 0.69 0.321362
Target:  5'- gGGGGCG-CCUggaaGUCCCCCGagggguuccGCGCCAu -3'
miRNA:   3'- gCUCCGCuGGGg---CGGGGGGC---------UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 47975 0.69 0.321362
Target:  5'- -cAGGCGA-CCCGCCCaggCCGAcucCGCCGu -3'
miRNA:   3'- gcUCCGCUgGGGCGGGg--GGCU---GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 21938 0.69 0.314663
Target:  5'- ---uGCGGCCCCGCCCCCUuugGGCGg-- -3'
miRNA:   3'- gcucCGCUGGGGCGGGGGG---CUGCggu -5'
5188 5' -66.8 NC_001798.1 + 76014 0.69 0.30807
Target:  5'- -aGGGCcccGugCCCGCCcgcccugggCCCCGAgGCCAu -3'
miRNA:   3'- gcUCCG---CugGGGCGG---------GGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29798 0.69 0.288926
Target:  5'- -cGGGCgGACCCCGgCCCCgagCGGcCGCCGc -3'
miRNA:   3'- gcUCCG-CUGGGGCgGGGG---GCU-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 120208 0.69 0.295202
Target:  5'- aGAGGagcucgGGCCCCGggccguuggcCCCCgCCGAgGCCAg -3'
miRNA:   3'- gCUCCg-----CUGGGGC----------GGGG-GGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 71101 0.69 0.301583
Target:  5'- --cGGCGugCgCGCCCCCgggGACGCUg -3'
miRNA:   3'- gcuCCGCugGgGCGGGGGg--CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82068 0.69 0.30807
Target:  5'- --cGG-GGCCCCGCggccggcccaCCCCGGCGCCu -3'
miRNA:   3'- gcuCCgCUGGGGCGg---------GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 150680 0.69 0.30807
Target:  5'- --cGGCGuCUUCGCCCaCCCGcGCGCCu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG-GGGC-UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 146229 0.69 0.314663
Target:  5'- gCGAGuccCGACgCCCcCCCCCCGcCGCCc -3'
miRNA:   3'- -GCUCc--GCUG-GGGcGGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 76375 0.69 0.314663
Target:  5'- --uGGCGGCCUgGCUCUcgguccugaCCGACGCCGc -3'
miRNA:   3'- gcuCCGCUGGGgCGGGG---------GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 54519 0.69 0.321362
Target:  5'- gCGAGGaccuCCCCGagCCCCCGcACGUCGa -3'
miRNA:   3'- -GCUCCgcu-GGGGCg-GGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 14794 0.69 0.321362
Target:  5'- uCGGGuGCGcguaucgccugcGCCCCGCCCggCCG-CGCCAa -3'
miRNA:   3'- -GCUC-CGC------------UGGGGCGGGg-GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 109576 0.69 0.295202
Target:  5'- cCGAGcGCGG-CCCGCCUgaUCGACGCCc -3'
miRNA:   3'- -GCUC-CGCUgGGGCGGGg-GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 34859 0.69 0.30807
Target:  5'- gCGGGG-GACgCCUuCCgCCCGGCGCCGg -3'
miRNA:   3'- -GCUCCgCUG-GGGcGGgGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 24725 0.69 0.295202
Target:  5'- gCGGGcGCGGCC--GCCCCgCCGcACGCCGa -3'
miRNA:   3'- -GCUC-CGCUGGggCGGGG-GGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 146594 0.69 0.295202
Target:  5'- aCGGGccgcggcgccaGCGGCCCaCGCCUCCCGcCGCa- -3'
miRNA:   3'- -GCUC-----------CGCUGGG-GCGGGGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 32028 0.69 0.30807
Target:  5'- -cGGGCGACCgcggccacgggCCGCUcgCCCCGGCGuCCGc -3'
miRNA:   3'- gcUCCGCUGG-----------GGCGG--GGGGCUGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.