Results 81 - 100 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 52115 | 0.71 | 0.216703 |
Target: 5'- cCGGGGCucugcuCgCCCGCUucaaCCCCGGCGCCGu -3' miRNA: 3'- -GCUCCGcu----G-GGGCGG----GGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21780 | 0.71 | 0.216703 |
Target: 5'- gCGAGGaaCGG-CCCGCCCCCCGuccgggccCGCCu -3' miRNA: 3'- -GCUCC--GCUgGGGCGGGGGGCu-------GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 88059 | 0.71 | 0.221661 |
Target: 5'- gGGGGCGGgCUCGUCCCCUGGgGCg- -3' miRNA: 3'- gCUCCGCUgGGGCGGGGGGCUgCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 96809 | 0.71 | 0.221661 |
Target: 5'- aGGGGCGACcaucgCCCGCCgCCUGGCGgaCCGc -3' miRNA: 3'- gCUCCGCUG-----GGGCGGgGGGCUGC--GGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21076 | 0.71 | 0.221661 |
Target: 5'- --cGG-GGCCCCGuCCCCCCGGC-CCGu -3' miRNA: 3'- gcuCCgCUGGGGC-GGGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23292 | 0.71 | 0.226715 |
Target: 5'- uCGccGCGACCCCcggcGCCCCgCCGACaCCAc -3' miRNA: 3'- -GCucCGCUGGGG----CGGGG-GGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 88336 | 0.71 | 0.226715 |
Target: 5'- aCGAGGaCGGCCCCgaacgccugcaGUCCCUCGggcaggggucGCGCCAg -3' miRNA: 3'- -GCUCC-GCUGGGG-----------CGGGGGGC----------UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 108247 | 0.71 | 0.226715 |
Target: 5'- -cGGGCGucugugguuGCCCaacaCCCCCGACGCCAg -3' miRNA: 3'- gcUCCGC---------UGGGgcg-GGGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 132131 | 0.71 | 0.226715 |
Target: 5'- -cAGGCGGCCCUGCgCCgCCgGGgGCCGg -3' miRNA: 3'- gcUCCGCUGGGGCG-GG-GGgCUgCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 15622 | 0.71 | 0.231867 |
Target: 5'- gGAGGCGACUgCCGUuuCCUCCGGCGUa- -3' miRNA: 3'- gCUCCGCUGG-GGCG--GGGGGCUGCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 150499 | 0.71 | 0.231867 |
Target: 5'- uGuGGCaGACCUCcCCCCCCGGgGCCc -3' miRNA: 3'- gCuCCG-CUGGGGcGGGGGGCUgCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 62407 | 0.71 | 0.233955 |
Target: 5'- gCGAGGacgacuacgaagaaGACCCCccccuccaGCCCCCgGACGUCGc -3' miRNA: 3'- -GCUCCg-------------CUGGGG--------CGGGGGgCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 505 | 0.71 | 0.237117 |
Target: 5'- gGGGGCuucCCCCGCCCCUCcccccGCGCCc -3' miRNA: 3'- gCUCCGcu-GGGGCGGGGGGc----UGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 102895 | 0.71 | 0.237117 |
Target: 5'- --cGGCGAUCCCgGCCUgCCGcCGCCGc -3' miRNA: 3'- gcuCCGCUGGGG-CGGGgGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 145613 | 0.71 | 0.237117 |
Target: 5'- gCGAcccCGACCCCGCCCCaCCGcccCGCCc -3' miRNA: 3'- -GCUcc-GCUGGGGCGGGG-GGCu--GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 30460 | 0.71 | 0.237117 |
Target: 5'- -aGGGCaGCCCCacGCCCgCCGACGCgCAg -3' miRNA: 3'- gcUCCGcUGGGG--CGGGgGGCUGCG-GU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 99655 | 0.71 | 0.237117 |
Target: 5'- --cGGCGGCUccuuCCGCuucuCCUCCGACGCCAu -3' miRNA: 3'- gcuCCGCUGG----GGCG----GGGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23900 | 0.71 | 0.239244 |
Target: 5'- gGAGGCGcgggcccgguucgagGCCUCggGCgCCCCGGCGCCc -3' miRNA: 3'- gCUCCGC---------------UGGGG--CGgGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 33184 | 0.71 | 0.241926 |
Target: 5'- gGGGGCGggcacgagaagccGCCCC-CaCCCCCGAgGCCu -3' miRNA: 3'- gCUCCGC-------------UGGGGcG-GGGGGCUgCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 16190 | 0.71 | 0.242466 |
Target: 5'- cCGGGGgGACgcacgggCCGCCCUCCGcacGCGCCGc -3' miRNA: 3'- -GCUCCgCUGg------GGCGGGGGGC---UGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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