miRNA display CGI


Results 121 - 140 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 56779 0.7 0.270729
Target:  5'- gCGGGG-GGCCCUGgCCgCCGACgGCCGc -3'
miRNA:   3'- -GCUCCgCUGGGGCgGGgGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 81797 0.7 0.274293
Target:  5'- aGGGGUGGcguccgccggcacuCCCCGCCccggucgCCCCGuCGCCGc -3'
miRNA:   3'- gCUCCGCU--------------GGGGCGG-------GGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 48349 0.7 0.27669
Target:  5'- uCGAcGCGACCgCgGCCgCCCGGgGCCGc -3'
miRNA:   3'- -GCUcCGCUGG-GgCGGgGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 9014 0.7 0.27669
Target:  5'- -cAGGaCGGCCCCgagacccaccGCCCCCCG-CaGCCAg -3'
miRNA:   3'- gcUCC-GCUGGGG----------CGGGGGGCuG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 135589 0.7 0.27669
Target:  5'- ---cGCG-CCUCGCCCCCUcccuGGCGCCAg -3'
miRNA:   3'- gcucCGCuGGGGCGGGGGG----CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 28355 0.7 0.27669
Target:  5'- cCGGcGGCGGCCCCccGCgUCCCCGcccgcggacGCGCCGc -3'
miRNA:   3'- -GCU-CCGCUGGGG--CG-GGGGGC---------UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150228 0.7 0.27669
Target:  5'- gCGGGG-GACCCCGgguccuCCCUCCG-CGCCc -3'
miRNA:   3'- -GCUCCgCUGGGGC------GGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 76273 0.7 0.282756
Target:  5'- gCGccGCGcucccccCCCCGCCCCCCcuCGCCAc -3'
miRNA:   3'- -GCucCGCu------GGGGCGGGGGGcuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 145720 0.7 0.282756
Target:  5'- gCGAGcccCGGCCCCgGCCcgcgCCCCGcCGCCAc -3'
miRNA:   3'- -GCUCc--GCUGGGG-CGG----GGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 80177 0.7 0.282756
Target:  5'- -cAGcGCcuGACCCCGCaUCCCGACGCCc -3'
miRNA:   3'- gcUC-CG--CUGGGGCGgGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 28952 0.7 0.282756
Target:  5'- gCGAGGgccCGGCgCCGCCCCgCCGcucCGCCc -3'
miRNA:   3'- -GCUCC---GCUGgGGCGGGG-GGCu--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 4131 0.7 0.285211
Target:  5'- cCGGGGCGccGCCCCcggggcccucgcggGCaCCCCCGccuccucgucguccGCGCCGa -3'
miRNA:   3'- -GCUCCGC--UGGGG--------------CG-GGGGGC--------------UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25323 0.69 0.288926
Target:  5'- gGAGGCcuACUgCGCCCCgcgggCCGugGCCGa -3'
miRNA:   3'- gCUCCGc-UGGgGCGGGG-----GGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29798 0.69 0.288926
Target:  5'- -cGGGCgGACCCCGgCCCCgagCGGcCGCCGc -3'
miRNA:   3'- gcUCCG-CUGGGGCgGGGG---GCU-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 146594 0.69 0.295202
Target:  5'- aCGGGccgcggcgccaGCGGCCCaCGCCUCCCGcCGCa- -3'
miRNA:   3'- -GCUC-----------CGCUGGG-GCGGGGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 109576 0.69 0.295202
Target:  5'- cCGAGcGCGG-CCCGCCUgaUCGACGCCc -3'
miRNA:   3'- -GCUC-CGCUgGGGCGGGg-GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 120208 0.69 0.295202
Target:  5'- aGAGGagcucgGGCCCCGggccguuggcCCCCgCCGAgGCCAg -3'
miRNA:   3'- gCUCCg-----CUGGGGC----------GGGG-GGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 24725 0.69 0.295202
Target:  5'- gCGGGcGCGGCC--GCCCCgCCGcACGCCGa -3'
miRNA:   3'- -GCUC-CGCUGGggCGGGG-GGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 19212 0.69 0.301583
Target:  5'- uGucGUgGACCCCGUUCCCCGcaGCGCCu -3'
miRNA:   3'- gCucCG-CUGGGGCGGGGGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 3798 0.69 0.301583
Target:  5'- cCGAGGCcucgaaccgGGCCCgCGCCUCCUccgccucgGGCGCCc -3'
miRNA:   3'- -GCUCCG---------CUGGG-GCGGGGGG--------CUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.