Results 141 - 160 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 71101 | 0.69 | 0.301583 |
Target: 5'- --cGGCGugCgCGCCCCCgggGACGCUg -3' miRNA: 3'- gcuCCGCugGgGCGGGGGg--CUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 76014 | 0.69 | 0.30807 |
Target: 5'- -aGGGCcccGugCCCGCCcgcccugggCCCCGAgGCCAu -3' miRNA: 3'- gcUCCG---CugGGGCGG---------GGGGCUgCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 150680 | 0.69 | 0.30807 |
Target: 5'- --cGGCGuCUUCGCCCaCCCGcGCGCCu -3' miRNA: 3'- gcuCCGCuGGGGCGGG-GGGC-UGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 82068 | 0.69 | 0.30807 |
Target: 5'- --cGG-GGCCCCGCggccggcccaCCCCGGCGCCu -3' miRNA: 3'- gcuCCgCUGGGGCGg---------GGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 32028 | 0.69 | 0.30807 |
Target: 5'- -cGGGCGACCgcggccacgggCCGCUcgCCCCGGCGuCCGc -3' miRNA: 3'- gcUCCGCUGG-----------GGCGG--GGGGCUGC-GGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 34859 | 0.69 | 0.30807 |
Target: 5'- gCGGGG-GACgCCUuCCgCCCGGCGCCGg -3' miRNA: 3'- -GCUCCgCUG-GGGcGGgGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 137057 | 0.69 | 0.310694 |
Target: 5'- aCGucGGCuGGuCCCCGCagcgcuuaaaguaauCCUCCGACGCCAc -3' miRNA: 3'- -GCu-CCG-CU-GGGGCG---------------GGGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 147156 | 0.69 | 0.314663 |
Target: 5'- cCGGGG-GuCCCggguaGCCgCCCGGCGCCGg -3' miRNA: 3'- -GCUCCgCuGGGg----CGGgGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 81384 | 0.69 | 0.314663 |
Target: 5'- --cGGCGAgCCCGUCCCCCcuCGCa- -3' miRNA: 3'- gcuCCGCUgGGGCGGGGGGcuGCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21938 | 0.69 | 0.314663 |
Target: 5'- ---uGCGGCCCCGCCCCCUuugGGCGg-- -3' miRNA: 3'- gcucCGCUGGGGCGGGGGG---CUGCggu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 44963 | 0.69 | 0.314663 |
Target: 5'- uCGGGccGCGGCUCCGCCCUCgGAgGCgGa -3' miRNA: 3'- -GCUC--CGCUGGGGCGGGGGgCUgCGgU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 146229 | 0.69 | 0.314663 |
Target: 5'- gCGAGuccCGACgCCCcCCCCCCGcCGCCc -3' miRNA: 3'- -GCUCc--GCUG-GGGcGGGGGGCuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 76375 | 0.69 | 0.314663 |
Target: 5'- --uGGCGGCCUgGCUCUcgguccugaCCGACGCCGc -3' miRNA: 3'- gcuCCGCUGGGgCGGGG---------GGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 54519 | 0.69 | 0.321362 |
Target: 5'- gCGAGGaccuCCCCGagCCCCCGcACGUCGa -3' miRNA: 3'- -GCUCCgcu-GGGGCg-GGGGGC-UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 14794 | 0.69 | 0.321362 |
Target: 5'- uCGGGuGCGcguaucgccugcGCCCCGCCCggCCG-CGCCAa -3' miRNA: 3'- -GCUC-CGC------------UGGGGCGGGg-GGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 47975 | 0.69 | 0.321362 |
Target: 5'- -cAGGCGA-CCCGCCCaggCCGAcucCGCCGu -3' miRNA: 3'- gcUCCGCUgGGGCGGGg--GGCU---GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 91091 | 0.69 | 0.321362 |
Target: 5'- gGAGGCGGCCgUCGUggaCCCCGguGCGCUg -3' miRNA: 3'- gCUCCGCUGG-GGCGg--GGGGC--UGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 78975 | 0.69 | 0.321362 |
Target: 5'- gGGGGCG-CCUggaaGUCCCCCGagggguuccGCGCCAu -3' miRNA: 3'- gCUCCGCuGGGg---CGGGGGGC---------UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 51500 | 0.69 | 0.324072 |
Target: 5'- -cAGGCGGCauucccccuggaccgCCUGaCCCCCCGAguCGCCGc -3' miRNA: 3'- gcUCCGCUG---------------GGGC-GGGGGGCU--GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 128250 | 0.69 | 0.326115 |
Target: 5'- gGAGGCGGCCggcaugguggaCCGCgggcucggccggcaCCUCUGGCGCCu -3' miRNA: 3'- gCUCCGCUGG-----------GGCG--------------GGGGGCUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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