Results 81 - 100 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 127130 | 0.67 | 0.417955 |
Target: 5'- gGGGGUuuggGAUgCCCGCCgCCCUGACcacgGCCAa -3' miRNA: 3'- gCUCCG----CUG-GGGCGG-GGGGCUG----CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 147191 | 0.67 | 0.417955 |
Target: 5'- -aAGGCGucCCCCGCCCggcggUCCGGC-CCGg -3' miRNA: 3'- gcUCCGCu-GGGGCGGG-----GGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 152051 | 0.67 | 0.417147 |
Target: 5'- gGGGGCGgcgcacgGCCCacggggGUCCCCCGAcCGCUu -3' miRNA: 3'- gCUCCGC-------UGGGg-----CGGGGGGCU-GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 79966 | 0.67 | 0.417147 |
Target: 5'- aGcGGCGGCgCCGCguccgccgccgggCCCCCGggggucccaGCGCCAc -3' miRNA: 3'- gCuCCGCUGgGGCG-------------GGGGGC---------UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 28426 | 0.67 | 0.409918 |
Target: 5'- uGAcGCccCUCCGaCCCCCUGACGCCc -3' miRNA: 3'- gCUcCGcuGGGGC-GGGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 28464 | 0.67 | 0.409918 |
Target: 5'- uGAcGCccCUCCGaCCCCCUGACGCCc -3' miRNA: 3'- gCUcCGcuGGGGC-GGGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 28502 | 0.67 | 0.409918 |
Target: 5'- uGAcGCccCUCCGaCCCCCUGACGCCc -3' miRNA: 3'- gCUcCGcuGGGGC-GGGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 147234 | 0.67 | 0.409918 |
Target: 5'- gCGcGGgGGCCCCgggGCCCCgggCCG-CGCCGg -3' miRNA: 3'- -GCuCCgCUGGGG---CGGGG---GGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 46833 | 0.67 | 0.409918 |
Target: 5'- uGAa-CGACUCCGCCCCCgCGAauaGCUAc -3' miRNA: 3'- gCUccGCUGGGGCGGGGG-GCUg--CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 77061 | 0.67 | 0.409918 |
Target: 5'- uCGuGGUggugcugaaGACCCUGUUCgCCGACGCCc -3' miRNA: 3'- -GCuCCG---------CUGGGGCGGGgGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 81305 | 0.67 | 0.409918 |
Target: 5'- cCGAGG--ACCCCGCugcccCCCCCGcACGgCAg -3' miRNA: 3'- -GCUCCgcUGGGGCG-----GGGGGC-UGCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23476 | 0.67 | 0.409918 |
Target: 5'- aCGAcGaCGACgccgCCCGCgCCCCCGccaGCGCCGc -3' miRNA: 3'- -GCUcC-GCUG----GGGCG-GGGGGC---UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 52754 | 0.67 | 0.409918 |
Target: 5'- aCGuGGaccuucGCCCCGCgUCCUCGGCGCCc -3' miRNA: 3'- -GCuCCgc----UGGGGCG-GGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 81230 | 0.67 | 0.409918 |
Target: 5'- aCGAGGCaGGuCCCUcUgCCCCGACcGCCGc -3' miRNA: 3'- -GCUCCG-CU-GGGGcGgGGGGCUG-CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 127789 | 0.67 | 0.409918 |
Target: 5'- ---cGCGACCCCgauaGUCCCCCGAagcgGCCc -3' miRNA: 3'- gcucCGCUGGGG----CGGGGGGCUg---CGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 30403 | 0.67 | 0.402768 |
Target: 5'- uCGAGGCGGgCCUGauggacgcggccacgCCCCCGGC-CCGg -3' miRNA: 3'- -GCUCCGCUgGGGCg--------------GGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 4925 | 0.67 | 0.401978 |
Target: 5'- cCGccGCGGCCCggagaCGUCCCCCGuccucgucCGCCAu -3' miRNA: 3'- -GCucCGCUGGG-----GCGGGGGGCu-------GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 145391 | 0.67 | 0.401978 |
Target: 5'- aGGGGCGACgCggggaaagcgCGCCCccgCCCGGcCGCCGc -3' miRNA: 3'- gCUCCGCUGgG----------GCGGG---GGGCU-GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 29024 | 0.67 | 0.401978 |
Target: 5'- -cGGGCccgGACUCCGCCCCggcgaCCGccccGCGCCGg -3' miRNA: 3'- gcUCCG---CUGGGGCGGGG-----GGC----UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 5288 | 0.67 | 0.401978 |
Target: 5'- gGAGGagcgauCGACgCCGCCgcgCCCCGGCucGCCGg -3' miRNA: 3'- gCUCC------GCUGgGGCGG---GGGGCUG--CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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