miRNA display CGI


Results 101 - 120 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 120652 0.67 0.401978
Target:  5'- ---cGCGGgCCUGCCCCCCGAUGaUCu -3'
miRNA:   3'- gcucCGCUgGGGCGGGGGGCUGC-GGu -5'
5188 5' -66.8 NC_001798.1 + 5543 0.67 0.394137
Target:  5'- uGAGaugcCGGCCCCGCgCUCCCGuuggccccCGCCGg -3'
miRNA:   3'- gCUCc---GCUGGGGCG-GGGGGCu-------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 21634 0.67 0.394137
Target:  5'- cCGGGuGCGucgguGCCCCGCUcgCCgCCGGCGUCu -3'
miRNA:   3'- -GCUC-CGC-----UGGGGCGG--GG-GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 44213 0.67 0.394137
Target:  5'- uGAGGCcGCgCUGCCCcagggacaugcgCCCGACGaCCGa -3'
miRNA:   3'- gCUCCGcUGgGGCGGG------------GGGCUGC-GGU- -5'
5188 5' -66.8 NC_001798.1 + 54294 0.67 0.394137
Target:  5'- uCGGGGCcGCCCUGgCCCCgGACcuGCUu -3'
miRNA:   3'- -GCUCCGcUGGGGCgGGGGgCUG--CGGu -5'
5188 5' -66.8 NC_001798.1 + 131059 0.67 0.394137
Target:  5'- gCGAGGUcACCgCGCCCaCCgCGGCGUa- -3'
miRNA:   3'- -GCUCCGcUGGgGCGGG-GG-GCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 138730 0.67 0.394137
Target:  5'- cCGGGccggcgcgcuccGCGGCCCCGgCgaCCGugGCCAg -3'
miRNA:   3'- -GCUC------------CGCUGGGGCgGggGGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 151851 0.67 0.393358
Target:  5'- uGAGGCGGgacCCCCGCgccguguCCCCCG-UGUCc -3'
miRNA:   3'- gCUCCGCU---GGGGCG-------GGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 80631 0.67 0.386395
Target:  5'- cCGccGCGACCcaCCGCaCCCCCGcCGCg- -3'
miRNA:   3'- -GCucCGCUGG--GGCG-GGGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 9610 0.67 0.386395
Target:  5'- cCGAgGGCGGCCagcaacagggCCGCCCCCagcacCGCCc -3'
miRNA:   3'- -GCU-CCGCUGG----------GGCGGGGGgcu--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 118598 0.67 0.386395
Target:  5'- -cGGGU-AUCUCGCgCCCCGAUGCCGc -3'
miRNA:   3'- gcUCCGcUGGGGCGgGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 122756 0.67 0.386395
Target:  5'- uCGAGGgGACCg---CCCCCGACGCg- -3'
miRNA:   3'- -GCUCCgCUGGggcgGGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 71411 0.67 0.385626
Target:  5'- gGGGGUG-CCCgcgcggaCGCCCCCCG--GCCAc -3'
miRNA:   3'- gCUCCGCuGGG-------GCGGGGGGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 94410 0.67 0.385626
Target:  5'- gGGGGCGGCUaucugCGCCCCCagccuaaCGGCcgGCCAg -3'
miRNA:   3'- gCUCCGCUGGg----GCGGGGG-------GCUG--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 33636 0.67 0.378753
Target:  5'- --cGGCGcccACCCCGCCCgcacaccugCCCGccACGCCc -3'
miRNA:   3'- gcuCCGC---UGGGGCGGG---------GGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 52990 0.67 0.378753
Target:  5'- -uGGGCGGCCCgccaCGCCCauaGGCGCCu -3'
miRNA:   3'- gcUCCGCUGGG----GCGGGgggCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 35546 0.67 0.378753
Target:  5'- gCGGGGCGuugccgGCCCgGCCcggCCCCGGaGCCc -3'
miRNA:   3'- -GCUCCGC------UGGGgCGG---GGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 126474 0.67 0.378753
Target:  5'- aGAcGGCcauGACCUCG-CCCCCGuCGCCc -3'
miRNA:   3'- gCU-CCG---CUGGGGCgGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 39472 0.67 0.378753
Target:  5'- aGGGGgGGCCUggcgCGUgCCUCGugGCCGc -3'
miRNA:   3'- gCUCCgCUGGG----GCGgGGGGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 28214 0.67 0.376481
Target:  5'- gGAGGCcccgcacGCCgcgccugccgccgcCUGCCCCCCGcCGCCGc -3'
miRNA:   3'- gCUCCGc------UGG--------------GGCGGGGGGCuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.