miRNA display CGI


Results 61 - 80 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 24725 0.69 0.295202
Target:  5'- gCGGGcGCGGCC--GCCCCgCCGcACGCCGa -3'
miRNA:   3'- -GCUC-CGCUGGggCGGGG-GGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25053 0.76 0.109287
Target:  5'- gGAGGCGcgcaagcgcaagaGCCCCGCCCCggCCagGGCGCCGc -3'
miRNA:   3'- gCUCCGC-------------UGGGGCGGGG--GG--CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25098 0.75 0.129656
Target:  5'- gGGcGGCGcCCCgCGCCCCCCGAagaagaGCCGc -3'
miRNA:   3'- gCU-CCGCuGGG-GCGGGGGGCUg-----CGGU- -5'
5188 5' -66.8 NC_001798.1 + 25130 0.67 0.426088
Target:  5'- gCGcGGaCGccCCCCGCCCCgCGGcCGCCc -3'
miRNA:   3'- -GCuCC-GCu-GGGGCGGGGgGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 25167 0.82 0.040712
Target:  5'- gGGGGCcgcgccCCCCGCCCCgCCGACGCCGc -3'
miRNA:   3'- gCUCCGcu----GGGGCGGGG-GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25198 0.72 0.193319
Target:  5'- cCGccGCGGCCgCCGCgCCCCgCGGCGCUg -3'
miRNA:   3'- -GCucCGCUGG-GGCG-GGGG-GCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 25323 0.69 0.288926
Target:  5'- gGAGGCcuACUgCGCCCCgcgggCCGugGCCGa -3'
miRNA:   3'- gCUCCGc-UGGgGCGGGG-----GGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25437 0.78 0.074067
Target:  5'- gCGcuGCGccGCCCCGCCCCCCGGCGgCGc -3'
miRNA:   3'- -GCucCGC--UGGGGCGGGGGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 25612 0.7 0.259117
Target:  5'- gGGGGCGGgCCC-CCCCCgGAguggucCGCCGa -3'
miRNA:   3'- gCUCCGCUgGGGcGGGGGgCU------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25711 0.66 0.476765
Target:  5'- -uGGGCGGgcaacuggaCCgGCgCCCCCGACGUCu -3'
miRNA:   3'- gcUCCGCUg--------GGgCG-GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 26456 0.66 0.485502
Target:  5'- gGAcGCGGgCCCGCCCCCgcaGAuaCGCUg -3'
miRNA:   3'- gCUcCGCUgGGGCGGGGGg--CU--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 27108 0.66 0.485502
Target:  5'- -cAGGUGGCCCgaGCCCCCC--CGCa- -3'
miRNA:   3'- gcUCCGCUGGGg-CGGGGGGcuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 27251 0.73 0.180374
Target:  5'- gGAGGCGGCCgcgggaCCGCagCCCCGugGCg- -3'
miRNA:   3'- gCUCCGCUGG------GGCGg-GGGGCugCGgu -5'
5188 5' -66.8 NC_001798.1 + 27518 0.66 0.44263
Target:  5'- gGGGGCG-CCCgcgggaaggcaGCCCCgCGGCGCgCGg -3'
miRNA:   3'- gCUCCGCuGGGg----------CGGGGgGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 27617 0.75 0.126588
Target:  5'- gCGGGGCuGCCCUGCCgCCCGccCGCCGc -3'
miRNA:   3'- -GCUCCGcUGGGGCGGgGGGCu-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 27715 0.72 0.207071
Target:  5'- gCGGGGCGGgaguCCCCGUCCUgCCGcCGCCc -3'
miRNA:   3'- -GCUCCGCU----GGGGCGGGG-GGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 27921 0.74 0.15276
Target:  5'- cCGGGGU--CCCCGCCgccggggUCCCGGCGCCGg -3'
miRNA:   3'- -GCUCCGcuGGGGCGG-------GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 27962 0.66 0.476765
Target:  5'- --cGGCGcuccaGCCgugCCGCgCCCCGGCGCUc -3'
miRNA:   3'- gcuCCGC-----UGG---GGCGgGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 28214 0.67 0.376481
Target:  5'- gGAGGCcccgcacGCCgcgccugccgccgcCUGCCCCCCGcCGCCGc -3'
miRNA:   3'- gCUCCGc------UGG--------------GGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 28355 0.7 0.27669
Target:  5'- cCGGcGGCGGCCCCccGCgUCCCCGcccgcggacGCGCCGc -3'
miRNA:   3'- -GCU-CCGCUGGGG--CG-GGGGGC---------UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.