miRNA display CGI


Results 81 - 100 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 28426 0.67 0.409918
Target:  5'- uGAcGCccCUCCGaCCCCCUGACGCCc -3'
miRNA:   3'- gCUcCGcuGGGGC-GGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 28464 0.67 0.409918
Target:  5'- uGAcGCccCUCCGaCCCCCUGACGCCc -3'
miRNA:   3'- gCUcCGcuGGGGC-GGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 28502 0.67 0.409918
Target:  5'- uGAcGCccCUCCGaCCCCCUGACGCCc -3'
miRNA:   3'- gCUcCGcuGGGGC-GGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 28688 0.66 0.44263
Target:  5'- cCGAGGCggucaucgGACCgUGCCUggagCCCGAgGCCc -3'
miRNA:   3'- -GCUCCG--------CUGGgGCGGG----GGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 28952 0.7 0.282756
Target:  5'- gCGAGGgccCGGCgCCGCCCCgCCGcucCGCCc -3'
miRNA:   3'- -GCUCC---GCUGgGGCGGGG-GGCu--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 28991 0.7 0.259117
Target:  5'- gGGGGCGGCgCCgGCCaaCCGcGCGCCGc -3'
miRNA:   3'- gCUCCGCUG-GGgCGGggGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29024 0.67 0.401978
Target:  5'- -cGGGCccgGACUCCGCCCCggcgaCCGccccGCGCCGg -3'
miRNA:   3'- gcUCCG---CUGGGGCGGGG-----GGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29499 0.66 0.456972
Target:  5'- aCGGGGCcGCCCCGagagggggggauucCCUCCCucCGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGC--------------GGGGGGcuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 29798 0.69 0.288926
Target:  5'- -cGGGCgGACCCCGgCCCCgagCGGcCGCCGc -3'
miRNA:   3'- gcUCCG-CUGGGGCgGGGG---GCU-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29849 0.66 0.485502
Target:  5'- aGAgGGCGACCCCcgggucucagGCCCCCCcuuuuccccgGACcacCCGg -3'
miRNA:   3'- gCU-CCGCUGGGG----------CGGGGGG----------CUGc--GGU- -5'
5188 5' -66.8 NC_001798.1 + 29979 0.73 0.173788
Target:  5'- uCGGGG-GACCCCcgugggccgugcgccGCCCCCCGAC-CCu -3'
miRNA:   3'- -GCUCCgCUGGGG---------------CGGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 30403 0.67 0.402768
Target:  5'- uCGAGGCGGgCCUGauggacgcggccacgCCCCCGGC-CCGg -3'
miRNA:   3'- -GCUCCGCUgGGGCg--------------GGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 30460 0.71 0.237117
Target:  5'- -aGGGCaGCCCCacGCCCgCCGACGCgCAg -3'
miRNA:   3'- gcUCCGcUGGGG--CGGGgGGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 30568 0.67 0.417955
Target:  5'- aCGAGaucGCCCCGCCCCUgCGcUGCCAg -3'
miRNA:   3'- -GCUCcgcUGGGGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 30822 0.68 0.371214
Target:  5'- cCGcGGaCGGCCCCGCgCuCCCUGuCGCUg -3'
miRNA:   3'- -GCuCC-GCUGGGGCG-G-GGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 30850 0.66 0.433487
Target:  5'- uGGGGgGacacacgguccgcGCCCUGucgcccacCCCCCCGugGCCc -3'
miRNA:   3'- gCUCCgC-------------UGGGGC--------GGGGGGCugCGGu -5'
5188 5' -66.8 NC_001798.1 + 31192 0.77 0.090166
Target:  5'- cCGccGCGACCCgaccggCGCCCCCUGGCGCCc -3'
miRNA:   3'- -GCucCGCUGGG------GCGGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 31281 0.72 0.207071
Target:  5'- gGGGGCGGCCCUGCCgUCgCGGcCGUCGu -3'
miRNA:   3'- gCUCCGCUGGGGCGGgGG-GCU-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 31569 0.72 0.193319
Target:  5'- uCGGGGCGcGCCgCGCgCCCCCGcGCgGCCGu -3'
miRNA:   3'- -GCUCCGC-UGGgGCG-GGGGGC-UG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 31822 0.68 0.356446
Target:  5'- cCGGGGUc-CCCCGCggcaccaacaCCCCCGGUGCCGc -3'
miRNA:   3'- -GCUCCGcuGGGGCG----------GGGGGCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.