miRNA display CGI


Results 101 - 120 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 31874 0.75 0.129656
Target:  5'- gGGGGCGGCggCCCGCCCCCggaagaGGCGCgGg -3'
miRNA:   3'- gCUCCGCUG--GGGCGGGGGg-----CUGCGgU- -5'
5188 5' -66.8 NC_001798.1 + 32028 0.69 0.30807
Target:  5'- -cGGGCGACCgcggccacgggCCGCUcgCCCCGGCGuCCGc -3'
miRNA:   3'- gcUCCGCUGG-----------GGCGG--GGGGCUGC-GGU- -5'
5188 5' -66.8 NC_001798.1 + 32067 0.69 0.328168
Target:  5'- -cGGGCG-CCgCGCCCCCguCGGCGUCu -3'
miRNA:   3'- gcUCCGCuGGgGCGGGGG--GCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 32364 0.75 0.117784
Target:  5'- -aGGGCGGCCCCgaGCCCggggcccgcgaCCCGGCGCCc -3'
miRNA:   3'- gcUCCGCUGGGG--CGGG-----------GGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 32634 0.7 0.264871
Target:  5'- uGAGGCc-CCCCGaCUaCCCGACGCCc -3'
miRNA:   3'- gCUCCGcuGGGGC-GGgGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 33184 0.71 0.241926
Target:  5'- gGGGGCGggcacgagaagccGCCCC-CaCCCCCGAgGCCu -3'
miRNA:   3'- gCUCCGC-------------UGGGGcG-GGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 33636 0.67 0.378753
Target:  5'- --cGGCGcccACCCCGCCCgcacaccugCCCGccACGCCc -3'
miRNA:   3'- gcuCCGC---UGGGGCGGG---------GGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 33957 0.73 0.164312
Target:  5'- ---aGCGGCCCCGgCCCCCGGC-CCGu -3'
miRNA:   3'- gcucCGCUGGGGCgGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 34538 0.73 0.156772
Target:  5'- aCGcAGGCGcCCCCcCCCCCCGGaGCCu -3'
miRNA:   3'- -GC-UCCGCuGGGGcGGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 34859 0.69 0.30807
Target:  5'- gCGGGG-GACgCCUuCCgCCCGGCGCCGg -3'
miRNA:   3'- -GCUCCgCUG-GGGcGGgGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 34970 0.66 0.485502
Target:  5'- gGGGGCGGCCgCCgaggugcggggGCCCCuCCG--GCCGg -3'
miRNA:   3'- gCUCCGCUGG-GG-----------CGGGG-GGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 35546 0.67 0.378753
Target:  5'- gCGGGGCGuugccgGCCCgGCCcggCCCCGGaGCCc -3'
miRNA:   3'- -GCUCCGC------UGGGgCGG---GGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 36970 0.66 0.434313
Target:  5'- gGAGaugauaGCGugauugacGCCCCGCCCCCauacgagagUGugGCCGg -3'
miRNA:   3'- gCUC------CGC--------UGGGGCGGGGG---------GCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 37341 0.8 0.052308
Target:  5'- aGAGGCGACCUcggauCGCCCCCCcaccuACGCCAu -3'
miRNA:   3'- gCUCCGCUGGG-----GCGGGGGGc----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 39472 0.67 0.378753
Target:  5'- aGGGGgGGCCUggcgCGUgCCUCGugGCCGc -3'
miRNA:   3'- gCUCCgCUGGG----GCGgGGGGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 39659 0.7 0.259117
Target:  5'- cCGGGGCcguaucGACCCCGgCCCCggCGGCGaCCu -3'
miRNA:   3'- -GCUCCG------CUGGGGCgGGGG--GCUGC-GGu -5'
5188 5' -66.8 NC_001798.1 + 43268 0.68 0.342096
Target:  5'- gGGGGCGucguGCCCUGCUgCUCCGugGCg- -3'
miRNA:   3'- gCUCCGC----UGGGGCGG-GGGGCugCGgu -5'
5188 5' -66.8 NC_001798.1 + 43336 0.79 0.068772
Target:  5'- gGGGGCGGCagugCCGCCCCCCG-CGUCGu -3'
miRNA:   3'- gCUCCGCUGg---GGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 44213 0.67 0.394137
Target:  5'- uGAGGCcGCgCUGCCCcagggacaugcgCCCGACGaCCGa -3'
miRNA:   3'- gCUCCGcUGgGGCGGG------------GGGCUGC-GGU- -5'
5188 5' -66.8 NC_001798.1 + 44963 0.69 0.314663
Target:  5'- uCGGGccGCGGCUCCGCCCUCgGAgGCgGa -3'
miRNA:   3'- -GCUC--CGCUGGGGCGGGGGgCUgCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.