miRNA display CGI


Results 121 - 140 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 46409 0.67 0.417955
Target:  5'- --cGGCagGGCCaCCGcCCCCCCGGCgGUCGc -3'
miRNA:   3'- gcuCCG--CUGG-GGC-GGGGGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 46833 0.67 0.409918
Target:  5'- uGAa-CGACUCCGCCCCCgCGAauaGCUAc -3'
miRNA:   3'- gCUccGCUGGGGCGGGGG-GCUg--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 47606 0.66 0.434313
Target:  5'- aCGAGGagcuguacuaUGGCCCgGUCuCCCCGGCGgacCCAg -3'
miRNA:   3'- -GCUCC----------GCUGGGgCGG-GGGGCUGC---GGU- -5'
5188 5' -66.8 NC_001798.1 + 47926 0.72 0.202396
Target:  5'- gCGGGGCGccuaagGCCuCCGCgaCCCCGGCGaCCGa -3'
miRNA:   3'- -GCUCCGC------UGG-GGCGg-GGGGCUGC-GGU- -5'
5188 5' -66.8 NC_001798.1 + 47975 0.69 0.321362
Target:  5'- -cAGGCGA-CCCGCCCaggCCGAcucCGCCGu -3'
miRNA:   3'- gcUCCGCUgGGGCGGGg--GGCU---GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 48349 0.7 0.27669
Target:  5'- uCGAcGCGACCgCgGCCgCCCGGgGCCGc -3'
miRNA:   3'- -GCUcCGCUGG-GgCGGgGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 48969 0.72 0.197812
Target:  5'- aCGGGGUuucGCCaCCGCCCCCC-AgGCCAg -3'
miRNA:   3'- -GCUCCGc--UGG-GGCGGGGGGcUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 49869 0.7 0.264871
Target:  5'- cCGGGGCgccccucacGACCCCGCCCguCCUGAgGgCAa -3'
miRNA:   3'- -GCUCCG---------CUGGGGCGGG--GGGCUgCgGU- -5'
5188 5' -66.8 NC_001798.1 + 50220 0.7 0.264871
Target:  5'- gGAGGUGGauaugaCGCCCgCCGACGCCc -3'
miRNA:   3'- gCUCCGCUggg---GCGGGgGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 51105 0.66 0.476765
Target:  5'- aGAuGGCGAgCgaagagCCGCCCCCgCGccguCGCCGg -3'
miRNA:   3'- gCU-CCGCUgG------GGCGGGGG-GCu---GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 51185 0.68 0.363778
Target:  5'- -cGGGCGGCggCGCCCCCC--CGCCGg -3'
miRNA:   3'- gcUCCGCUGggGCGGGGGGcuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 51500 0.69 0.324072
Target:  5'- -cAGGCGGCauucccccuggaccgCCUGaCCCCCCGAguCGCCGc -3'
miRNA:   3'- gcUCCGCUG---------------GGGC-GGGGGGCU--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 51964 0.75 0.120653
Target:  5'- gGAGG-GGCCgCGCCCCCCcaccccggccccGACGCCGc -3'
miRNA:   3'- gCUCCgCUGGgGCGGGGGG------------CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 52115 0.71 0.216703
Target:  5'- cCGGGGCucugcuCgCCCGCUucaaCCCCGGCGCCGu -3'
miRNA:   3'- -GCUCCGcu----G-GGGCGG----GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 52305 0.74 0.149547
Target:  5'- gGAGGCGcuguuucgcGCCCUGCCCCUgGGCaGCCc -3'
miRNA:   3'- gCUCCGC---------UGGGGCGGGGGgCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 52754 0.67 0.409918
Target:  5'- aCGuGGaccuucGCCCCGCgUCCUCGGCGCCc -3'
miRNA:   3'- -GCuCCgc----UGGGGCG-GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 52802 0.68 0.370466
Target:  5'- gGAcGGCaGACCCCGCCUuccugcucgaagaCCUGGCgGCCu -3'
miRNA:   3'- gCU-CCG-CUGGGGCGGG-------------GGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 52936 0.75 0.123588
Target:  5'- aCGAGGaGACCgCCGCCCUCCgGGCGCa- -3'
miRNA:   3'- -GCUCCgCUGG-GGCGGGGGG-CUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 52990 0.67 0.378753
Target:  5'- -uGGGCGGCCCgccaCGCCCauaGGCGCCu -3'
miRNA:   3'- gcUCCGCUGGG----GCGGGgggCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 54294 0.67 0.394137
Target:  5'- uCGGGGCcGCCCUGgCCCCgGACcuGCUu -3'
miRNA:   3'- -GCUCCGcUGGGGCgGGGGgCUG--CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.