miRNA display CGI


Results 141 - 160 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 54519 0.69 0.321362
Target:  5'- gCGAGGaccuCCCCGagCCCCCGcACGUCGa -3'
miRNA:   3'- -GCUCCgcu-GGGGCg-GGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 54612 0.74 0.146049
Target:  5'- cCGGGGCGcCCCCGCgCCuCCCGccccgcaaccccGCGCCc -3'
miRNA:   3'- -GCUCCGCuGGGGCG-GG-GGGC------------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 55013 0.66 0.459529
Target:  5'- gCGGGGCcGCCCUGCCgggaGACGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGCGGggggCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 55081 0.66 0.485502
Target:  5'- uGGGGCGggucuGCCCUcuucuCCCCUCGGCggGCCAc -3'
miRNA:   3'- gCUCCGC-----UGGGGc----GGGGGGCUG--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 55916 0.68 0.335079
Target:  5'- aCGAGcGCaaaGGCCCCGacgauCgCUCCGACGCCGa -3'
miRNA:   3'- -GCUC-CG---CUGGGGCg----G-GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 56779 0.7 0.270729
Target:  5'- gCGGGG-GGCCCUGgCCgCCGACgGCCGc -3'
miRNA:   3'- -GCUCCgCUGGGGCgGGgGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 58297 0.66 0.437629
Target:  5'- cCGGGGCGcgagggucugacacaGCUCCGUCaggCCCGcCGCCGc -3'
miRNA:   3'- -GCUCCGC---------------UGGGGCGGg--GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 58656 0.66 0.475895
Target:  5'- --cGGCGGCgguugucccgaggCCCGCCaCCaCCGcCGCCGu -3'
miRNA:   3'- gcuCCGCUG-------------GGGCGG-GG-GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 58900 0.7 0.264871
Target:  5'- gGAGGCG-CgCCgGCCuCCCCGAgGCUc -3'
miRNA:   3'- gCUCCGCuG-GGgCGG-GGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 59687 0.67 0.42527
Target:  5'- gGGGGCGGCgggcacgCCCGUCUUCgGGCGCUu -3'
miRNA:   3'- gCUCCGCUG-------GGGCGGGGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 61464 0.66 0.484625
Target:  5'- cCGGGGCcuccgGGCCCCGgagggcuacuuuaCCCCCau-CGCCGu -3'
miRNA:   3'- -GCUCCG-----CUGGGGC-------------GGGGGgcuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 61696 0.66 0.485502
Target:  5'- -aAGGCGAUCCUGgCCCgCaCGACgGCCc -3'
miRNA:   3'- gcUCCGCUGGGGCgGGG-G-GCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 61879 0.68 0.363041
Target:  5'- --cGGCGGCCCCcucgggcGCgCCCUCGAaGCCGg -3'
miRNA:   3'- gcuCCGCUGGGG-------CG-GGGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 62407 0.71 0.233955
Target:  5'- gCGAGGacgacuacgaagaaGACCCCccccuccaGCCCCCgGACGUCGc -3'
miRNA:   3'- -GCUCCg-------------CUGGGG--------CGGGGGgCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 64106 0.83 0.031643
Target:  5'- uCGGGGCcGCCCCGgCCCCCGACGCg- -3'
miRNA:   3'- -GCUCCGcUGGGGCgGGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 66817 0.66 0.459529
Target:  5'- cCGucGCGgaGCCCgGCCCggugCCGGCGCCc -3'
miRNA:   3'- -GCucCGC--UGGGgCGGGg---GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 67114 0.66 0.468106
Target:  5'- ---cGCGGCCCCGacgucCUUCUCGGCGCCGc -3'
miRNA:   3'- gcucCGCUGGGGC-----GGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 67570 0.66 0.44263
Target:  5'- gGGGGCGACCUCgGgCUCCCGGgGUUc -3'
miRNA:   3'- gCUCCGCUGGGG-CgGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 68383 0.69 0.328168
Target:  5'- -aGGGCGcCCCCGCagaUCCGGCuGCCAg -3'
miRNA:   3'- gcUCCGCuGGGGCGgg-GGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 70453 0.69 0.328168
Target:  5'- gCGGuGGCGcuCCCCGagaCCCCCGAgGCg- -3'
miRNA:   3'- -GCU-CCGCu-GGGGCg--GGGGGCUgCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.