miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 135053 0.75 0.114978
Target:  5'- gGAGGCGGCCggCCGCCUCCUGccCGCCu -3'
miRNA:   3'- gCUCCGCUGG--GGCGGGGGGCu-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 134368 0.66 0.468106
Target:  5'- uGGGGCccGCCggCCGCUCCUCG-CGCCGc -3'
miRNA:   3'- gCUCCGc-UGG--GGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 133822 0.72 0.21184
Target:  5'- uCGAGGCGGCUCUGUcggagcuuCCCaCCGAgGCCu -3'
miRNA:   3'- -GCUCCGCUGGGGCG--------GGG-GGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 132162 0.8 0.050889
Target:  5'- gCGGGGCGcCCCCcccggacGCCCCCCcgGACGCCAc -3'
miRNA:   3'- -GCUCCGCuGGGG-------CGGGGGG--CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 132131 0.71 0.226715
Target:  5'- -cAGGCGGCCCUGCgCCgCCgGGgGCCGg -3'
miRNA:   3'- gcUCCGCUGGGGCG-GG-GGgCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 131346 0.66 0.434313
Target:  5'- cCGGGcGCGACgUCGgCgCCCGGCGCg- -3'
miRNA:   3'- -GCUC-CGCUGgGGCgGgGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 131059 0.67 0.394137
Target:  5'- gCGAGGUcACCgCGCCCaCCgCGGCGUa- -3'
miRNA:   3'- -GCUCCGcUGGgGCGGG-GG-GCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 129032 0.67 0.426088
Target:  5'- -aAGGCGauGCUCCGCCCCggauCgGGCGCUg -3'
miRNA:   3'- gcUCCGC--UGGGGCGGGG----GgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 128810 0.73 0.170577
Target:  5'- cCGAGccaaguacgcguuCGACCCCGCggaCCCCGGCGCCc -3'
miRNA:   3'- -GCUCc------------GCUGGGGCGg--GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 128764 0.66 0.476765
Target:  5'- --uGGC--CCCCGCCCCCCaGACcCCc -3'
miRNA:   3'- gcuCCGcuGGGGCGGGGGG-CUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 128363 0.66 0.459529
Target:  5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3'
miRNA:   3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 128250 0.69 0.326115
Target:  5'- gGAGGCGGCCggcaugguggaCCGCgggcucggccggcaCCUCUGGCGCCu -3'
miRNA:   3'- gCUCCGCUGG-----------GGCG--------------GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 127851 0.66 0.434313
Target:  5'- -uGGGCcccGCCCCGCCCCaCCc-CGCCc -3'
miRNA:   3'- gcUCCGc--UGGGGCGGGG-GGcuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 127789 0.67 0.409918
Target:  5'- ---cGCGACCCCgauaGUCCCCCGAagcgGCCc -3'
miRNA:   3'- gcucCGCUGGGG----CGGGGGGCUg---CGGu -5'
5188 5' -66.8 NC_001798.1 + 127743 0.7 0.264871
Target:  5'- ---uGCGGCCgCCGCaacaCCCGGCGCCAa -3'
miRNA:   3'- gcucCGCUGG-GGCGgg--GGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 127130 0.67 0.417955
Target:  5'- gGGGGUuuggGAUgCCCGCCgCCCUGACcacgGCCAa -3'
miRNA:   3'- gCUCCG----CUG-GGGCGG-GGGGCUG----CGGU- -5'
5188 5' -66.8 NC_001798.1 + 126474 0.67 0.378753
Target:  5'- aGAcGGCcauGACCUCG-CCCCCGuCGCCc -3'
miRNA:   3'- gCU-CCG---CUGGGGCgGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 126284 0.73 0.180374
Target:  5'- ---aGCGGCCCCuCCCCCCGagacgGCGCCGu -3'
miRNA:   3'- gcucCGCUGGGGcGGGGGGC-----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 125347 0.66 0.459529
Target:  5'- uGuGGUcGCCCCcaaagucacGCCCCCUGaguuGCGCCGg -3'
miRNA:   3'- gCuCCGcUGGGG---------CGGGGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 124280 0.68 0.363778
Target:  5'- -cAGGCGA-CCCGCCgCCCG-CGCa- -3'
miRNA:   3'- gcUCCGCUgGGGCGGgGGGCuGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.