miRNA display CGI


Results 61 - 80 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 124082 0.79 0.059254
Target:  5'- gGAGGCGGCgCCUGCgCCCCGACgGCCc -3'
miRNA:   3'- gCUCCGCUG-GGGCGgGGGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 124005 0.7 0.264871
Target:  5'- uGGGGUcGCUCUGUCCCCCGGgcaGCCGg -3'
miRNA:   3'- gCUCCGcUGGGGCGGGGGGCUg--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 123434 0.72 0.193319
Target:  5'- cCGGGGCGcCCCCcccgacgcgcGCgCCCCCGAC-CCGg -3'
miRNA:   3'- -GCUCCGCuGGGG----------CG-GGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 123390 0.73 0.172176
Target:  5'- -cAGGCGACgCCagGCCCCCCGGgaGCCGc -3'
miRNA:   3'- gcUCCGCUG-GGg-CGGGGGGCUg-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 123227 0.66 0.467245
Target:  5'- gCGGGGCGgcuacgggacccgGCCuuGUCCgCUGACGCg- -3'
miRNA:   3'- -GCUCCGC-------------UGGggCGGGgGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 122756 0.67 0.386395
Target:  5'- uCGAGGgGACCg---CCCCCGACGCg- -3'
miRNA:   3'- -GCUCCgCUGGggcgGGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 122511 0.7 0.264871
Target:  5'- uCGAGG-GACCCCuGCgCCaCCCG-CGCCc -3'
miRNA:   3'- -GCUCCgCUGGGG-CG-GG-GGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 122371 0.73 0.164312
Target:  5'- -cGGGCGACgcgCCCGCCCCCCG-CGgCu -3'
miRNA:   3'- gcUCCGCUG---GGGCGGGGGGCuGCgGu -5'
5188 5' -66.8 NC_001798.1 + 121412 0.73 0.179956
Target:  5'- gGGGGCGAuccuagcCCCCGUCaUCCCGGCGCa- -3'
miRNA:   3'- gCUCCGCU-------GGGGCGG-GGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 120652 0.67 0.401978
Target:  5'- ---cGCGGgCCUGCCCCCCGAUGaUCu -3'
miRNA:   3'- gcucCGCUgGGGCGGGGGGCUGC-GGu -5'
5188 5' -66.8 NC_001798.1 + 120208 0.69 0.295202
Target:  5'- aGAGGagcucgGGCCCCGggccguuggcCCCCgCCGAgGCCAg -3'
miRNA:   3'- gCUCCg-----CUGGGGC----------GGGG-GGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 119027 0.74 0.137957
Target:  5'- cCGGGGCauccgggaccucaACCCCGaCCCCCgGACGCCc -3'
miRNA:   3'- -GCUCCGc------------UGGGGC-GGGGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 118598 0.67 0.386395
Target:  5'- -cGGGU-AUCUCGCgCCCCGAUGCCGc -3'
miRNA:   3'- gcUCCGcUGGGGCGgGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 118068 0.68 0.371214
Target:  5'- ---aGCGACCCCGCCCUgcuaCGcaGCGCCc -3'
miRNA:   3'- gcucCGCUGGGGCGGGGg---GC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 117527 0.66 0.451036
Target:  5'- uGGGGcCGGCCCaGCCCcuCCCGgucuuuggcuGCGCCc -3'
miRNA:   3'- gCUCC-GCUGGGgCGGG--GGGC----------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 116770 0.66 0.468106
Target:  5'- aCGAcGGCGcuGCUgUGCUCCgCGGCGCCc -3'
miRNA:   3'- -GCU-CCGC--UGGgGCGGGGgGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 116618 0.7 0.264871
Target:  5'- cCGAGcGaucccgugacCGACCCCGCCCaCCCGcugcauccCGCCAa -3'
miRNA:   3'- -GCUC-C----------GCUGGGGCGGG-GGGCu-------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 115528 0.74 0.135999
Target:  5'- aCGucGCGGCCCCgGCCggCCCCGGCGCgGa -3'
miRNA:   3'- -GCucCGCUGGGG-CGG--GGGGCUGCGgU- -5'
5188 5' -66.8 NC_001798.1 + 115318 0.66 0.485502
Target:  5'- cCGGGGaccugGugCCCGCCCCCg---GCCAc -3'
miRNA:   3'- -GCUCCg----CugGGGCGGGGGgcugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 114832 0.67 0.426088
Target:  5'- cCGuGGCcguGCCCCGCCUgaCGcACGCCGa -3'
miRNA:   3'- -GCuCCGc--UGGGGCGGGggGC-UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.