miRNA display CGI


Results 81 - 100 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 111724 0.69 0.328168
Target:  5'- uGAcGGUGGcccgcuuggcCCCCGCgCCCCCGGCcCCGg -3'
miRNA:   3'- gCU-CCGCU----------GGGGCG-GGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 111604 0.66 0.459529
Target:  5'- gCGGGGCGGCCUCcuggaGCCCCgggGGCGgCAg -3'
miRNA:   3'- -GCUCCGCUGGGG-----CGGGGgg-CUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 109780 0.68 0.349219
Target:  5'- gCGcGGCGACCCaCGCCgauCUCCGggccGCGCUAg -3'
miRNA:   3'- -GCuCCGCUGGG-GCGG---GGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 109576 0.69 0.295202
Target:  5'- cCGAGcGCGG-CCCGCCUgaUCGACGCCc -3'
miRNA:   3'- -GCUC-CGCUgGGGCGGGg-GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 108642 0.66 0.435141
Target:  5'- aCGGGGCGACCgagaggcacccggaCgGCcgacgcaacgcgccgCCCCCGGgGCCGc -3'
miRNA:   3'- -GCUCCGCUGG--------------GgCG---------------GGGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 108516 0.78 0.080542
Target:  5'- cCGAGGUGACCCagcucaagggacuguCGCacaaCCCCGGCGCCu -3'
miRNA:   3'- -GCUCCGCUGGG---------------GCGg---GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 108247 0.71 0.226715
Target:  5'- -cGGGCGucugugguuGCCCaacaCCCCCGACGCCAg -3'
miRNA:   3'- gcUCCGC---------UGGGgcg-GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 107439 0.82 0.038715
Target:  5'- cCGcGGCGACCCCGCgCCCCGACcCCGa -3'
miRNA:   3'- -GCuCCGCUGGGGCGgGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 107077 0.66 0.451036
Target:  5'- gGAGGCuGugggcccgcaaGCCCCG-CCCCCGGC-CCu -3'
miRNA:   3'- gCUCCG-C-----------UGGGGCgGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 106094 0.72 0.21184
Target:  5'- uCGcGGCGACCCgGCgCCgCGACcGCCGg -3'
miRNA:   3'- -GCuCCGCUGGGgCGgGGgGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 105212 0.66 0.433487
Target:  5'- gCGAcGGCGcuGCCCCGuccgcagcgcccuCCCCCCu-CGCCu -3'
miRNA:   3'- -GCU-CCGC--UGGGGC-------------GGGGGGcuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 104295 0.66 0.440125
Target:  5'- --uGGCG-CCCgaguccaauccggaCGCCCCCCGAgcgauggccucCGCCGg -3'
miRNA:   3'- gcuCCGCuGGG--------------GCGGGGGGCU-----------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 103575 0.68 0.356446
Target:  5'- aGAGGCGccuCCaaCCGCUcgcgcauuuCCgCCGACGCCAu -3'
miRNA:   3'- gCUCCGCu--GG--GGCGG---------GG-GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 103192 0.72 0.193319
Target:  5'- -cGGGCGgaACCUCGuCCCCCCGGCGUUu -3'
miRNA:   3'- gcUCCGC--UGGGGC-GGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 102895 0.71 0.237117
Target:  5'- --cGGCGAUCCCgGCCUgCCGcCGCCGc -3'
miRNA:   3'- gcuCCGCUGGGG-CGGGgGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 102836 0.7 0.24627
Target:  5'- aGGGGCaGACUCCGCCCCCCauauuuuaaauuuuuCGCUc -3'
miRNA:   3'- gCUCCG-CUGGGGCGGGGGGcu-------------GCGGu -5'
5188 5' -66.8 NC_001798.1 + 99655 0.71 0.237117
Target:  5'- --cGGCGGCUccuuCCGCuucuCCUCCGACGCCAu -3'
miRNA:   3'- gcuCCGCUGG----GGCG----GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 98857 0.71 0.216703
Target:  5'- ---cGUGugCCCGCCCCCgacgGGCGCCAc -3'
miRNA:   3'- gcucCGCugGGGCGGGGGg---CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 98749 1.07 0.000503
Target:  5'- cCGAGGCGACCCCGCCCCCCGACGCCAa -3'
miRNA:   3'- -GCUCCGCUGGGGCGGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 98650 0.73 0.175823
Target:  5'- uCGcGGCGAacgggggUCCCGCCUCCCGGcCGCCc -3'
miRNA:   3'- -GCuCCGCU-------GGGGCGGGGGGCU-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.