miRNA display CGI


Results 101 - 120 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 98602 0.79 0.063842
Target:  5'- --cGGCGGCCCCggcgGCCCCCCG-CGCCu -3'
miRNA:   3'- gcuCCGCUGGGG----CGGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 97136 0.66 0.468106
Target:  5'- --cGGCGAUCgCGCCCgCCacuccaccaugGACGCCu -3'
miRNA:   3'- gcuCCGCUGGgGCGGGgGG-----------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 97061 0.66 0.47156
Target:  5'- gGAGGCGcaugacguguuucagGCCacuaCGCCCggCCUGuACGCCAu -3'
miRNA:   3'- gCUCCGC---------------UGGg---GCGGG--GGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 96889 0.67 0.426088
Target:  5'- aCGAGcuGCGACgguaCCUGCCCCaCGcCGCCGg -3'
miRNA:   3'- -GCUC--CGCUG----GGGCGGGGgGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 96809 0.71 0.221661
Target:  5'- aGGGGCGACcaucgCCCGCCgCCUGGCGgaCCGc -3'
miRNA:   3'- gCUCCGCUG-----GGGCGGgGGGCUGC--GGU- -5'
5188 5' -66.8 NC_001798.1 + 96170 0.7 0.259117
Target:  5'- --uGGCGGCCgCGCCCCCgGcCGCg- -3'
miRNA:   3'- gcuCCGCUGGgGCGGGGGgCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 95581 0.7 0.247915
Target:  5'- aCGAGGCGgagGCCCUggucaGCCagCUCGGCGCCGc -3'
miRNA:   3'- -GCUCCGC---UGGGG-----CGGg-GGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 95027 0.68 0.356446
Target:  5'- gGAGGCcggGGCCCgCGCgcugauggacuCCCUCGACGCgCAc -3'
miRNA:   3'- gCUCCG---CUGGG-GCG-----------GGGGGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 94410 0.67 0.385626
Target:  5'- gGGGGCGGCUaucugCGCCCCCagccuaaCGGCcgGCCAg -3'
miRNA:   3'- gCUCCGCUGGg----GCGGGGG-------GCUG--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 93501 0.68 0.335079
Target:  5'- aGGGGCG-CCCCacggcGCCCCUCGuCGgCGg -3'
miRNA:   3'- gCUCCGCuGGGG-----CGGGGGGCuGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 93197 0.68 0.356446
Target:  5'- uCGAuGGCGGuCUuugacgagCCGCCCCCCGACaucaCCAc -3'
miRNA:   3'- -GCU-CCGCU-GG--------GGCGGGGGGCUGc---GGU- -5'
5188 5' -66.8 NC_001798.1 + 92928 0.66 0.484625
Target:  5'- uCGAGGCGgucgucgGgCCCGCCg-CCGugGCCc -3'
miRNA:   3'- -GCUCCGC-------UgGGGCGGggGGCugCGGu -5'
5188 5' -66.8 NC_001798.1 + 92056 0.68 0.371214
Target:  5'- gCGGGuGUaGACCCCaCCCCCa-GCGCCGg -3'
miRNA:   3'- -GCUC-CG-CUGGGGcGGGGGgcUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 91826 0.72 0.21184
Target:  5'- gCGGGGCccGACgCCGCCCCUCccagcACGCCGu -3'
miRNA:   3'- -GCUCCG--CUGgGGCGGGGGGc----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 91777 0.7 0.253465
Target:  5'- -aGGGCGGCCaCGCCCCCUgccgauGACGCgCGg -3'
miRNA:   3'- gcUCCGCUGGgGCGGGGGG------CUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 91314 0.66 0.485502
Target:  5'- gGGGGCaaaaaACCCagaCGCCgCCCGAgcCGCCGg -3'
miRNA:   3'- gCUCCGc----UGGG---GCGGgGGGCU--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 91091 0.69 0.321362
Target:  5'- gGAGGCGGCCgUCGUggaCCCCGguGCGCUg -3'
miRNA:   3'- gCUCCGCUGG-GGCGg--GGGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 88336 0.71 0.226715
Target:  5'- aCGAGGaCGGCCCCgaacgccugcaGUCCCUCGggcaggggucGCGCCAg -3'
miRNA:   3'- -GCUCC-GCUGGGG-----------CGGGGGGC----------UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 88059 0.71 0.221661
Target:  5'- gGGGGCGGgCUCGUCCCCUGGgGCg- -3'
miRNA:   3'- gCUCCGCUgGGGCGGGGGGCUgCGgu -5'
5188 5' -66.8 NC_001798.1 + 85713 0.67 0.417955
Target:  5'- -cAGGcCGACgCCC-UCCCCgGGCGCCGc -3'
miRNA:   3'- gcUCC-GCUG-GGGcGGGGGgCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.