miRNA display CGI


Results 121 - 140 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 85230 0.73 0.164312
Target:  5'- gGAGaGCGACgucgcgCCCGCCCCCCcGCgGCCGc -3'
miRNA:   3'- gCUC-CGCUG------GGGCGGGGGGcUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 85025 0.66 0.433487
Target:  5'- --uGGCGACgUCCGCCCCgggggugCCGucgaGCGCCGc -3'
miRNA:   3'- gcuCCGCUG-GGGCGGGG-------GGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 84889 0.68 0.335079
Target:  5'- -cAGaCGGCCgCGUCCCCCG-CGCCGu -3'
miRNA:   3'- gcUCcGCUGGgGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 84205 0.73 0.180374
Target:  5'- cCGccGUGAUCgCGCCCCCCGggGCGCCGu -3'
miRNA:   3'- -GCucCGCUGGgGCGGGGGGC--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 84111 0.66 0.476765
Target:  5'- -cGGGCGuCCaggccgaggCGCCCCuuGACGUCGu -3'
miRNA:   3'- gcUCCGCuGGg--------GCGGGGggCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 83872 0.67 0.417955
Target:  5'- cCGAGGCGGcgacCCCCGgC-CCgGGCGCUc -3'
miRNA:   3'- -GCUCCGCU----GGGGCgGgGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82801 0.66 0.454423
Target:  5'- cCGAGGCgcucGACCCCcUCCCaCCGGaaccgcauugcccccCGCCGa -3'
miRNA:   3'- -GCUCCG----CUGGGGcGGGG-GGCU---------------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 82068 0.69 0.30807
Target:  5'- --cGG-GGCCCCGCggccggcccaCCCCGGCGCCu -3'
miRNA:   3'- gcuCCgCUGGGGCGg---------GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82008 0.75 0.120653
Target:  5'- gGGGGCGACCgCCGCCgCggCCGcCGCCAg -3'
miRNA:   3'- gCUCCGCUGG-GGCGGgG--GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 81940 0.73 0.172176
Target:  5'- gCGGGGCcuuUCCCGCCCCCaCGcucGCGCCc -3'
miRNA:   3'- -GCUCCGcu-GGGGCGGGGG-GC---UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 81797 0.7 0.274293
Target:  5'- aGGGGUGGcguccgccggcacuCCCCGCCccggucgCCCCGuCGCCGc -3'
miRNA:   3'- gCUCCGCU--------------GGGGCGG-------GGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 81601 0.67 0.417955
Target:  5'- aCGGGGCGcguGCCCgugGCCCCUcgCGACGaCCc -3'
miRNA:   3'- -GCUCCGC---UGGGg--CGGGGG--GCUGC-GGu -5'
5188 5' -66.8 NC_001798.1 + 81446 0.68 0.371214
Target:  5'- aCGAcgccGGCGGCCCCacGCCCaauCCGGCcCCGg -3'
miRNA:   3'- -GCU----CCGCUGGGG--CGGGg--GGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 81384 0.69 0.314663
Target:  5'- --cGGCGAgCCCGUCCCCCcuCGCa- -3'
miRNA:   3'- gcuCCGCUgGGGCGGGGGGcuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 81343 0.73 0.172176
Target:  5'- cCGGGG-GuCCUCGCCCCcacucuccucaCCGACGCCAc -3'
miRNA:   3'- -GCUCCgCuGGGGCGGGG-----------GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 81305 0.67 0.409918
Target:  5'- cCGAGG--ACCCCGCugcccCCCCCGcACGgCAg -3'
miRNA:   3'- -GCUCCgcUGGGGCG-----GGGGGC-UGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 81230 0.67 0.409918
Target:  5'- aCGAGGCaGGuCCCUcUgCCCCGACcGCCGc -3'
miRNA:   3'- -GCUCCG-CU-GGGGcGgGGGGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 81007 0.66 0.468106
Target:  5'- -uGGGaaGCCCCggaGCCCCCCGGCcCCc -3'
miRNA:   3'- gcUCCgcUGGGG---CGGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 80631 0.67 0.386395
Target:  5'- cCGccGCGACCcaCCGCaCCCCCGcCGCg- -3'
miRNA:   3'- -GCucCGCUGG--GGCG-GGGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 80562 0.76 0.097022
Target:  5'- gCGAGGCGucccuCCCCgagGCCCCCC-ACGCCc -3'
miRNA:   3'- -GCUCCGCu----GGGG---CGGGGGGcUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.